April 28, 2020 Dataset Open Access

Becher, Hannes; Brown, Max R; Powell, Gavin; Metherell, Chris; Riddiford Nick J; Twyford, Alex D

DataCite XML Export

<?xml version='1.0' encoding='utf-8'?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.3774489</identifier>
  <creators>
    <creator>
      <creatorName>Becher, Hannes</creatorName>
      <givenName>Hannes</givenName>
      <familyName>Becher</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-3700-2942</nameIdentifier>
      <affiliation>University of Edinburgh</affiliation>
    </creator>
    <creator>
      <creatorName>Brown, Max R</creatorName>
      <givenName>Max R</givenName>
      <familyName>Brown</familyName>
      <affiliation>University of Edinburgh</affiliation>
    </creator>
    <creator>
      <creatorName>Powell, Gavin</creatorName>
      <givenName>Gavin</givenName>
      <familyName>Powell</familyName>
      <affiliation>Royal Botanic Garden Edinburgh</affiliation>
    </creator>
    <creator>
      <creatorName>Metherell, Chris</creatorName>
      <givenName>Chris</givenName>
      <familyName>Metherell</familyName>
      <affiliation>Botanical Society of Britain and Ireland</affiliation>
    </creator>
    <creator>
      <creatorName>Riddiford Nick J</creatorName>
    </creator>
    <creator>
      <creatorName>Twyford, Alex D</creatorName>
      <givenName>Alex D</givenName>
      <familyName>Twyford</familyName>
      <affiliation>University of Edinburgh</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Eyebright species maintenance (scripts and data accompanying Becher et al., Plant Communications)</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>Euphrasia</subject>
    <subject>k-mers</subject>
    <subject>genome assembly</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-04-28</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3774489</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3774488</relatedIdentifier>
  </relatedIdentifiers>
  <version>1</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;&lt;strong&gt;This gzipped TAR ball contains data and scripts related to the study on Fair Isle eyebrights by Hannes Becher, Max R. Brown, Gavin Powell, Chris Metherell, Nick J. Riddiford, and Alex D. Twyford, submitted to Plant Communications.&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;Data: genome assembly of&lt;em&gt; Euphrasia arctica&lt;/em&gt;, variant call files of the &amp;quot;tetraploid&amp;quot; and &amp;quot;conserved&amp;quot; sets of scaffolds, per-individual k-mer spectra, mapping depths, etc.&lt;/p&gt;

&lt;p&gt;Scripts: R scripts for the analysis of plant trait data, heterozygosity, ect.; an ipython notebook for the analysis of variant data, and a Mathematica notebook with the derivation of the formulae used to fit pop gen parameters to k-mer spectra.&lt;/p&gt;</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>Research Councils UK</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000690</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/RCUK/NERC/NE%2FL011336%2F1/">NE/L011336/1</awardNumber>
      <awardTitle>Hybridization and the origin of novel taxa in Euphrasia</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>Research Councils UK</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000690</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/RCUK/NERC/NE%2FR010609%2F1/">NE/R010609/1</awardNumber>
      <awardTitle>Ecological speciation and host adaptation in a parasitic plant</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>Research Councils UK</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000690</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/RCUK/NERC/NE%2FN006739%2F1/">NE/N006739/1</awardNumber>
      <awardTitle>Evolutionary consequences of facultative plant parasitism</awardTitle>
    </fundingReference>
  </fundingReferences>
</resource>