Software Open Access
Randy Heiland; Paul Macklin
pc4covid19 - COVID19 tissue simulator nanoHUB app
Version: 2.1 - uses the core model at https://github.com/pc4covid19/COVID19/releases/tag/0.2.1
Release date: 26 April 2020
This repository contains code and data for the nanoHUB app https://nanohub.org/tools/pc4covid19. Here, we primarily report on changes to the app's GUI.
It is based on the model at https://github.com/pc4covid19/COVID19. Refer to that repository for a summary of changes to the model.
Caveats and disclaimers:
This model is under active development using rapid prototyping:
This model will be continually refined with input from the community, particularly experts in infectious diseases. The validation state will be updated as this progresses.
Release summary: 2.1:
Sync up with the version number of the published app, https://nanohub.org/tools/pc4covid19, and include a reference to the version of the core model in this README.
The major change to the GUI in this release is the addition of an 'Animate' tab. This allows animation of cells (not substrates) in the tab and the generation of a .mp4 video that can be downloaded. The animation uses the cells' SVG files.
Provides a "standard" PhysiCell-based Jupyter notebook GUI consisting of 5 tabs: