Supplement of manuscript "microorganisms-746193"
- 1. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research
Description
This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193):
TITLE:
Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities
AUTHORS:
Stephanie Elferink, Stephanie.westphal@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research
Uwe John, Uwe.John@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity
Stefan Neuhaus, Stephan.neuhaus@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research
Sylke Wohlrab, Sylke.wohlrab@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity
JOURNAL:
MDPI - microorganisms
MS-ID:
microorganisms-746193
HOWTO:
Sequences identified as Alveloates or Stramenopiles (description in manuscript) had been were classified more accurately by PhyloAssigner version 6.166 (https://github.com/jungbluth/phyloassigner, Vergin et al., 2013, DOI:10.1038/ismej.2013.32) with a phylogenetic placement onto reference trees based on 18S/28S concatenated alignments, according to Elferink et al. 2017 (DOI: 10.1016/j.dsr.2016.11.002).
CONTENT:
reference databases:
- Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb
- Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb
query sequence files:
- Alveolata_seqtab_SIGN_dada2.fasta
- Alveolata_seqtab_SIGN_dada2.fasta
created output folder including the taxonomic annotation:
- Alveolata_seqtab_SIGN_dada2.place.out
- Stramenopiles_seqtab_SIGN_dada2.place.out
text file containing the used commands:
- commands
Files
Alveolata_seqtab_SIGN_dada2.place.out.zip
Files
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