Dataset Open Access

Supplement of manuscript "microorganisms-746193"

Stephanie Elferink; Uwe John; Stefan Neuhaus; Sylke Wohlrab

This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193):

TITLE:

Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities

AUTHORS:

Stephanie Elferink, Stephanie.westphal@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research  

Uwe John, Uwe.John@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity

Stefan Neuhaus, Stephan.neuhaus@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research  

Sylke Wohlrab, Sylke.wohlrab@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity

JOURNAL:

MDPI - microorganisms

MS-ID:

microorganisms-746193

HOWTO:

Sequences identified as Alveloates or Stramenopiles (description in manuscript) had been were classified more accurately by PhyloAssigner version 6.166 (https://github.com/jungbluth/phyloassigner, Vergin et al., 2013, DOI:10.1038/ismej.2013.32) with a phylogenetic placement onto reference trees based on 18S/28S concatenated alignments, according to Elferink et al. 2017 (DOI: 10.1016/j.dsr.2016.11.002).

CONTENT:

reference databases:

- Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb

- Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb

query sequence files:

- Alveolata_seqtab_SIGN_dada2.fasta

- Alveolata_seqtab_SIGN_dada2.fasta

created output folder including the taxonomic annotation:

- Alveolata_seqtab_SIGN_dada2.place.out

- Stramenopiles_seqtab_SIGN_dada2.place.out

text file containing the used commands:

- commands

Files (2.6 MB)
Name Size
Alveolata_seqtab_SIGN_dada2.fasta
md5:dece1994e8a76a154c3ae20d49b8edfb
97.0 kB Download
Alveolata_seqtab_SIGN_dada2.place.out.zip
md5:537dafd9b0e30e38c47174142a187328
453.0 kB Download
Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb.zip
md5:1581b94214729a423e2c901cc90c27ab
151.6 kB Download
commands
md5:3f0664552f0975c4954d52391f119e17
457 Bytes Download
Stramenopiles_seqtab_SIGN_dada2.fasta
md5:3347eac587e5968b3971e01c6b6940d9
108.4 kB Download
Stramenopiles_seqtab_SIGN_dada2.place.out.zip
md5:9b191ec482d15e0ccbcdc944f19d400b
1.4 MB Download
Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb.zip
md5:799517e267bb39f71afe325813561c5f
424.2 kB Download
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