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connectomicslab/connectomemapper3: Connectome Mapper v3.0.0-beta-RC1

Tourbier, Sebastien; Aleman-Gomez, Yasser; Mullier, Emeline; Griffa, Alessandra; Bach Cuadra, Meritxell; Hagmann, Patric

This is the beta release candidate v3.0.0-beta-RC1 of the Connectome Mapper which merges PR #28.

List of changes with respect to previous 3.0.0-beta-20200227, auto-generated with git log v3.0.0-beta-20200227..HEAD --pretty=format:' * %s %Cgreen(%cr) - commit %Cred%h%Creset' --abbrev-commit:

  • DOC: updated titles of index and readme (5 hours ago) - commit 11b53b7
  • DOC: added tag for latest released version in index page (5 hours ago) - commit b5a3f07
  • DOC: updated version tag beta-RC1 + documentation with changes prior to release (5 hours ago) - commit f0373f3
  • MAINT: updated copyright/license (6 hours ago) - commit 51a62ed
  • Merge pull request #28 from connectomicslab/beta-20200320 (6 hours ago) - commit 1b3d1e2
  • CI: error with motion_corrected.nii.gz solved and ds-sample_outputs.txt updated (24 hours ago) - commit 5632c3f
  • CI: added sudo to find (31 hours ago) - commit 2dc9064
  • CI: added "ls -la ..." to debug error in checking outputs of CMP run in test job (2 days ago) - commit e9de657
  • CI: try to get files owned by circleci user only. (2 days ago) - commit e0ce146
  • CI: reviewed comments (2 days ago) - commit ba782b1
  • CI: updated config to compare list of outputs (3 days ago) - commit 9dc6c9b
  • CI: updated list of output to check complete execution of CMP run test (3 days ago) - commit 2fbcf19
  • CI: extented run timeout to 6h for run (6 days ago) - commit ff3ef01
  • FIX: correction of path to config files in bids app execution command generated by GUI (6 days ago) - commit ce15380
  • FIX: using freesurfer license.txt stored at other locations than in code/ in GUI (6 days ago) - commit 02fb286
  • FIX: create nipype directory before starting logging and execution (6 days ago) - commit 0f96917
  • ENH: dynamic copyright inherited from info.py (7 days ago) - commit 7488cc6
  • CI: commented cache during test for generating outputs.txt (7 days ago) - commit b40d350
  • DOC: updated outputs (7 days ago) - commit 35c95ac
  • MAINT: added missing renaming (7 days ago) - commit c256659
  • MAINT: updated output path of log and config files (7 days ago) - commit 48f0221
  • CI: resampled diffusion because of MemoryError in SHORE (7 days ago) - commit 82d1df8
  • MAINT: changed CMP pipeline config files used for testing (7 days ago) - commit 439bf3a
  • FIX: mrtrix3 version (8 days ago) - commit 004bc8c
  • FIX: reviewed order of inputs of interface to dwibiascorrect (8 days ago) - commit 5fc3821
  • CI: fixed paths (8 days ago) - commit 6cb5840
  • CI: enhanced deployment of master as latest and releases (8 days ago) - commit 2886203
  • FIX: reviewed order of inputs of interface to dwibiascorrect (8 days ago) - commit a1500a6
  • FIX: reviewed numpy implmentation (np.where causing memory error) (8 days ago) - commit dbae66d
  • MAINT: updated version tag and expected release date (8 days ago) - commit f92b4d7
  • CI: reviewed caching of files (9 days ago) - commit 1a718ea
  • CI: updated version of sample dataset with typo in dataset_description.json corrected (9 days ago) - commit 8877279
  • CI: print content of ds-sample dataset for debugging (9 days ago) - commit b2c122f
  • CI: fix freesurfer license.txt (10 days ago) - commit be7c566
  • CI: still fixing image, new try with docker 18.09 (10 days ago) - commit 6ad7a6e
  • CI: still fixing image with docker 19 (10 days ago) - commit bc903fb
  • CI: updated circleci image to use with docker 19.03 installed (10 days ago) - commit 8cf61d4
  • CI: updated image circleci/classic:201808-01 (10 days ago) - commit 0516184
  • FIX: with respect to updated input and output dirs (10 days ago) - commit f9f5f5d
  • CI: updated image with docker 19.03.5 (10 days ago) - commit 51f338d
  • FIX: $FS_LICEBSE in dockerfile (13 days ago) - commit c5ab8d7
  • CI: renamed ds00005 -> ds-sample (13 days ago) - commit 287c586
  • CI: renamed cached data and updated run command (13 days ago) - commit d13add7
  • CI: fix hosting of sample dataset which is now published on Zenodo (13 days ago) - commit 0ef8ce2
  • CI: updated osf.io links (2 weeks ago) - commit b4664d3
  • CI: updated with in-house sample dataset hosted on OSF.io (2 weeks ago) - commit de8f500
  • DOC: fix reference to cmpbids page (2 weeks ago) - commit 1fef3a9
  • DOC: added reference to support (2 weeks ago) - commit 5fef6ae
  • DOC: updated cmp icon (2 weeks ago) - commit 0b589e0
  • DOC: updated flowchart (2 weeks ago) - commit 38037e0
  • DOC: updated outputs page (2 weeks ago) - commit 4e20ced
  • DOC: reviewed TOC and added ouputs page (2 weeks ago) - commit e1e2a87
  • DOC: added reference to top of GUI page (2 weeks ago) - commit 877dcff
  • DOC: added illustrations for nipype derivatives (2 weeks ago) - commit 8bccb1a
  • DOC: removed Execution and the BIDS format section from usage page (2 weeks ago) - commit cb9d015
  • DOC: added page for CMP and BIDS inputs (2 weeks ago) - commit 0d3187a
  • DOC: fix indent (2 weeks ago) - commit 4c994a2
  • DOC: added doc page for outputs and support (2 weeks ago) - commit 7bf0885
  • DOC: reviewed index and usage pages (2 weeks ago) - commit 52270ca
  • ZENODO: Added Emeline as contributor (3 weeks ago) - commit 4d0a2c9
  • DOC: fix typo |release| (3 weeks ago) - commit 4154a07

Funded by Sinergia Grant 170873 from the Swiss National Science Foundation (See http://p3.snf.ch/Project-170873 for details)
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