Dataset Open Access

mGEMS Escherichia coli reference dataset

Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Mäklinen, Veli; Corander, Jukka; Honkela, Antti


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  <identifier identifierType="DOI">10.5281/zenodo.3724112</identifier>
  <creators>
    <creator>
      <creatorName>Mäklin, Tommi</creatorName>
      <givenName>Tommi</givenName>
      <familyName>Mäklin</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-0970-3514</nameIdentifier>
      <affiliation>University of Helsinki, Helsinki, Finland</affiliation>
    </creator>
    <creator>
      <creatorName>Kallonen, Teemu</creatorName>
      <givenName>Teemu</givenName>
      <familyName>Kallonen</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-1741-6486</nameIdentifier>
      <affiliation>University of Oslo, Oslo, Norway</affiliation>
    </creator>
    <creator>
      <creatorName>Alanko, Jarno</creatorName>
      <givenName>Jarno</givenName>
      <familyName>Alanko</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-8003-9225</nameIdentifier>
      <affiliation>University of Helsinki, Helsinki, Finland</affiliation>
    </creator>
    <creator>
      <creatorName>Mäklinen, Veli</creatorName>
      <givenName>Veli</givenName>
      <familyName>Mäklinen</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-4454-1493</nameIdentifier>
      <affiliation>University of Helsinki, Helsinki, Finland</affiliation>
    </creator>
    <creator>
      <creatorName>Corander, Jukka</creatorName>
      <givenName>Jukka</givenName>
      <familyName>Corander</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7752-1942</nameIdentifier>
      <affiliation>University of Oslo, Oslo, Norway</affiliation>
    </creator>
    <creator>
      <creatorName>Honkela, Antti</creatorName>
      <givenName>Antti</givenName>
      <familyName>Honkela</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-9193-8093</nameIdentifier>
      <affiliation>University of Helsinki, Helsinki, Finland</affiliation>
    </creator>
  </creators>
  <titles>
    <title>mGEMS Escherichia coli reference dataset</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>escherichia coli</subject>
    <subject>reference data</subject>
    <subject>mGEMS</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-03-23</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3724112</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3724111</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.0.0</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This dataset contains the &lt;em&gt;E. coli&lt;/em&gt; sequences (assembled with shovill v0.9.0), their sequence type 131 sublineages, and accession numbers used in the mGEMS publication as the reference dataset.&lt;/p&gt;</description>
  </descriptions>
</resource>
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