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Notebooks demonstrating Most Permissive Boolean Networks

Paulevé, Loïc


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    <subfield code="a">&lt;p&gt;These notebooks can be executed within &lt;a href="http://colomoto.org/notebook"&gt;&lt;code&gt;colomoto/colomoto-docker:2020-03-19&lt;/code&gt;&lt;/a&gt; Docker image.&lt;/p&gt;

&lt;p&gt;They rely on the Python library &lt;a href="https://github.com/pauleve/mpbn"&gt;mpbn&lt;/a&gt;, see the documentation for usage and examples at &lt;a href="https://mpbn.readthedocs.io/"&gt;https://mpbn.readthedocs.io&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;Visualize online:&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;a href="https://nbviewer.jupyter.org/urls/zenodo.org/record/3719097/files/MPBN%20applied%20to%20Bladder%20Tumorigenesis%20by%20Remy%20et%20al%202015.ipynb"&gt;MPBN applied to Bladder Tumorigenesis by Remy et al 2015.ipynb&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://nbviewer.jupyter.org/urls/zenodo.org/record/3719097/files/MPBN%20applied%20to%20T-Cell%20differentiation%20model%20by%20Abou-Jaoud%C3%A9%20et%20al.%202015.ipynb"&gt;MPBN applied to T-Cell differentiation model by Abou-Jaoud&amp;eacute; et al. 2015.ipynb&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://nbviewer.jupyter.org/urls/zenodo.org/record/3719097/files/MPBN%20applied%20to%20Tumour%20invasion%20model%20by%20Cohen%20et%20al.%202015.ipynb"&gt;MPBN applied to Tumour invasion model by Cohen et al. 2015.ipynb&lt;/a&gt;&lt;/li&gt;
	&lt;li&gt;&lt;a href="https://nbviewer.jupyter.org/urls/zenodo.org/record/3719097/files/Scalability%20on%20large%20random%20BNs.ipynb"&gt;Scalability on large random BNs.ipynb&lt;/a&gt;&lt;/li&gt;
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