LDATS-v0.2.7.zip
weecology-LDATS-9c09c0f
.DS_Store
6.1 kB
.Rbuildignore
200 Bytes
.gitignore
75 Bytes
.travis.yml
586 Bytes
.zenodo.json
1.4 kB
CODE_OF_CONDUCT.md
3.2 kB
CONTRIBUTING.md
4.4 kB
DESCRIPTION
2.2 kB
LDATS_model.pdf
660.4 kB
LICENSE
38 Bytes
LICENSE.md
1.1 kB
NAMESPACE
3.6 kB
NEWS.md
10.7 kB
R
LDA.R
12.0 kB
LDATS.R
2.5 kB
LDA_TS.R
17.2 kB
LDA_TS_plots.R
6.8 kB
LDA_plots.R
8.8 kB
TS.R
42.0 kB
TS_on_LDA.R
27.5 kB
TS_plots.R
24.8 kB
data.R
2.9 kB
multinom_TS.R
16.3 kB
ptMCMC.R
37.9 kB
simulate.R
8.5 kB
utilities.R
9.9 kB
README.md
6.2 kB
_pkgdown.yml
4.1 kB
cran-comments.md
880 Bytes
data
jornada.RData
1.0 kB
rodents.RData
8.3 kB
doc
LDATS_codebase.R
453 Bytes
LDATS_codebase.Rmd
3.9 kB
LDATS_codebase.html
13.2 kB
paper-comparison.R
24.1 kB
paper-comparison.Rmd
33.9 kB
paper-comparison.html
232.9 kB
rodents-example.R
4.2 kB
rodents-example.Rmd
8.4 kB
rodents-example.html
105.0 kB
inst
WORDLIST
735 Bytes
man
AICc.Rd
513 Bytes
LDATS.Rd
1.8 kB
LDA_TS.Rd
6.5 kB
LDA_TS_control.Rd
3.3 kB
LDA_msg.Rd
679 Bytes
LDA_set.Rd
2.8 kB
LDA_set_control.Rd
1.1 kB
TS.Rd
7.8 kB
TS_control.Rd
2.7 kB
TS_diagnostics_plot.Rd
1.6 kB
TS_on_LDA.Rd
4.6 kB
TS_summary_plot.Rd
2.9 kB
autocorr_plot.Rd
626 Bytes
check_LDA_models.Rd
914 Bytes
check_changepoints.Rd
581 Bytes
check_control.Rd
538 Bytes
check_document_covariate_table.Rd
1.1 kB
check_document_term_table.Rd
797 Bytes
check_formula.Rd
1.4 kB
check_formulas.Rd
1.1 kB
check_nchangepoints.Rd
597 Bytes
check_seeds.Rd
645 Bytes
check_timename.Rd
905 Bytes
check_topics.Rd
563 Bytes
check_weights.Rd
732 Bytes
count_trips.Rd
1.8 kB
diagnose_ptMCMC.Rd
2.8 kB
document_weights.Rd
825 Bytes
ecdf_plot.Rd
812 Bytes
est_changepoints.Rd
3.4 kB
est_regressors.Rd
4.8 kB
expand_TS.Rd
2.2 kB
iftrue.Rd
468 Bytes
jornada.Rd
1.2 kB
logLik.LDA_VEM.Rd
1.7 kB
logLik.TS_fit.Rd
1.1 kB
logLik.multinom_TS_fit.Rd
1.3 kB
logsumexp.Rd
435 Bytes
memoise_fun.Rd
646 Bytes
messageq.Rd
667 Bytes
mirror_vcov.Rd
979 Bytes
modalvalue.Rd
506 Bytes
multinom_TS.Rd
4.1 kB
multinom_TS_chunk.Rd
2.7 kB
normalize.Rd
363 Bytes
package_LDA_TS.Rd
1.8 kB
package_LDA_set.Rd
1.4 kB
package_TS.Rd
5.5 kB
package_TS_on_LDA.Rd
1.8 kB
package_chunk_fits.Rd
1.8 kB
plot.LDA_TS.Rd
2.3 kB
plot.LDA_VEM.Rd
2.8 kB
plot.LDA_set.Rd
662 Bytes
plot.TS_fit.Rd
2.6 kB
posterior_plot.Rd
796 Bytes
prep_LDA_control.Rd
809 Bytes
prep_TS_data.Rd
2.2 kB
prep_chunks.Rd
1.7 kB
prep_cpts.Rd
4.3 kB
prep_ids.Rd
2.1 kB
prep_pbar.Rd
1.4 kB
prep_proposal_dist.Rd
1.9 kB
prep_ptMCMC_inputs.Rd
3.4 kB
prep_saves.Rd
3.0 kB
prep_temp_sequence.Rd
1.0 kB
print.LDA_TS.Rd
832 Bytes
print.TS_fit.Rd
972 Bytes
print.TS_on_LDA.Rd
1.1 kB
print_model_run_message.Rd
1.8 kB
proposed_step_mods.Rd
1.9 kB
rho_lines.Rd
965 Bytes
rodents.Rd
1.8 kB
select_LDA.Rd
1.2 kB
select_TS.Rd
1.6 kB
set_LDA_TS_plot_cols.Rd
3.3 kB
set_LDA_plot_colors.Rd
1.5 kB
set_TS_summary_plot_cols.Rd
2.7 kB
set_gamma_colors.Rd
1.5 kB
set_rho_hist_colors.Rd
1.8 kB
sim_LDA_TS_data.Rd
2.3 kB
sim_LDA_data.Rd
1.8 kB
sim_TS_data.Rd
1.7 kB
softmax.Rd
508 Bytes
step_chains.Rd
4.3 kB
summarize_etas.Rd
1.3 kB
summarize_rhos.Rd
1.4 kB
swap_chains.Rd
3.3 kB
trace_plot.Rd
727 Bytes
verify_changepoint_locations.Rd
1.4 kB
tests
figs
check-lda-plot-functions
base-lda-plot-bottom-panel.svg
17.9 kB
base-lda-plot-top-panel.svg
17.5 kB
base-lda-plot.svg
35.3 kB
base-lda-set-selected-plot.svg
57.8 kB
lda-plot-with-time-x.svg
35.3 kB
check-lda-ts-plot-functions
base-lda-ts-non-interactive-plot.svg
147.3 kB
check-ts-plot-functions
base-ts-autocorr-plot.svg
8.5 kB
base-ts-diagnostic-plot.svg
33.3 kB
base-ts-ecdf-plot.svg
8.3 kB
base-ts-eta-diagnostic-plot.svg
34.6 kB
base-ts-gamma-plot.svg
17.8 kB
base-ts-plot.svg
113.1 kB
base-ts-posterior-plot.svg
6.4 kB
base-ts-rho-diagnostic-plot.svg
28.5 kB
base-ts-rho-plot.svg
95.1 kB
base-ts-summary-plot.svg
113.1 kB
base-ts-trace-plot.svg
5.9 kB
rho-line-plot.svg
6.1 kB
deps.txt
67 Bytes
testthat
test-01-data.R
444 Bytes
test-02-lda.R
2.3 kB
test-03-lda_plot.R
2.2 kB
test-04-LDA_TS.R
2.5 kB
test-05-LDA_TS_plots.R
1.3 kB
test-06-multinom_TS.R
3.6 kB
test-07-ptMCMC.R
9.2 kB
test-08-simulate.R
3.7 kB
test-09-TS.R
8.6 kB
test-10-TS_on_LDA.R
9.3 kB
test-11-TS_plots.R
6.1 kB
test-12-utilities.R
5.0 kB
testthat.R
261 Bytes
vignettes
.DS_Store
6.1 kB
LDATS_codebase.Rmd
3.9 kB
paper-comparison.Rmd
33.9 kB
rodents-example-files
changepoint_models.Rds
459.1 kB
lda_model_set.Rds
797.4 kB
lda_ts_results.Rds
1.4 MB
rodents-example.Rmd
8.4 kB