3710410
doi
10.5281/zenodo.3710410
oai:zenodo.org:3710410
Bruce Martin
@chanzuckerberg
Charlotte Weaver
Sidney Bell
Chan Zuckerberg Initiative
Severiano Badajoz
@chanzuckerberg @MakeSchool
Matt Weiden
Chan-Zuckerberg Initiative
Justin Kiggins
@chanzuckerberg
Jeremy Freeman
starting something new
fionagriffin
bmccandless
Marcus Kinsella
Chan Zuckerberg Initiatve
Snyk bot
@Snyk
Prete
Philipp A.
Marcio von Muhlen
James Taylor
Isaac Virshup
University of Melbourne
Gökçen Eraslan
GenevieveHaliburton
Alex Wolf
Cellarity
chanzuckerberg/cellxgene: Release 0.15.0
Colin Megill
@pol-is
url:https://github.com/chanzuckerberg/cellxgene/tree/0.15.0
info:eu-repo/semantics/openAccess
Other (Open)
<p>Summary: 0.15 resolves incompatibilities with the current anndata/scanpy releases, improves ontology-driven label input in user annotations, moves annotations to a supported feature, and resolves a number of miscellaneous bugs and UI issues.</p>
<p>Added:</p>
<ul>
<li><p>User annotations feature has moved to a fully supported feature, and is no longer experimental (nb. command line params have changed, and annotations are enabled by default - see documentation for more information).</p>
</li>
<li><p>Experimental support for ontology-driven annotation/label input was further enhanced. Users can now pick from an ontology or define their own label in a single dialog, and ontologies are available for both label and category creation and editing.</p>
</li>
<li><p>Code coverage reports added to the github repo CI pipeline</p>
</li>
<li><p>Significant additions to unit & smoke tests and configuration testing in the CI pipeline</p>
</li>
<li><p>Added experimental support computed re-embedding on user-selected cell sets.</p>
</li>
<li><p>Better handling of annotations with very large number of categorical values.</p>
</li>
</ul>
<p>Changed:</p>
<ul>
<li><p>Resolved incompatibility with annata 0.7 and remove pinned Python dependencies for anndata, h5py and tables modules. This resolves several compatibility issues with H5AD files. #1157, #1202</p>
</li>
<li><p>Reset UI replaced with Subset and Unsubset (#1183), and unsubset no longer deletes genes in the right side bar (fixes #1171).</p>
</li>
<li><p>Work in preparation for a web-hosted cellxgene (not yet available or complete), including:</p>
<ul>
<li><p>Incremental loading of data on the front end</p>
</li>
<li><p>Refactoring the back-end to support a cloud-native data format built upon tiledb.</p>
</li>
<li><p>#1140, #1163, #1200</p>
</li>
</ul>
</li>
<li><p>Javascript and Python package dependencies updated.</p>
</li>
<li><p>Variety of small UI improvements throughout the application, including more readable data labels on the main graph (#1141, #1160), better handling of long strings (#1206), improved enable/disable state on buttons, etc.</p>
</li>
</ul>
<p>Fixed:</p>
<ul>
<li><p>Datasets with more than 32 annotations would occasionally cause the crossfilter to get confused, and selection state to be lost (#1162)</p>
</li>
<li><p>Undo/redo was not working correctly with color-by-annotation and other UI actions (#1165)</p>
</li>
</ul>
Zenodo
2020-03-13
info:eu-repo/semantics/other
3235020
0.15.0
1663342401.314334
172158650
md5:f4c0ae92df7d88fc86f30204e1f1c91c
https://zenodo.org/records/3710410/files/chanzuckerberg/cellxgene-0.15.0.zip
public
https://github.com/chanzuckerberg/cellxgene/tree/0.15.0
Is supplement to
url
10.5281/zenodo.3235020
isVersionOf
doi