Bhardwaj, Vivek
Heyne, Steffen
Ryan, Devon P
Manke, Thomas
2018-08-21
<p><strong>Test files for running snakePipes workflows</strong></p>
<p><strong>snakePipes</strong> are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to <a href="https://snakepipes.readthedocs.io/en/latest/">this link</a> for further information on snakePipes.</p>
<p>This folder contains test files that can be used to run DNA-mapping workflow under snakePipes. To test the workflow, follow the following steps : </p>
<ul>
<li>Download or prepare genome fasta, indices and annotations for human (<strong>hg38</strong>) genome.</li>
<li>Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes`</li>
<li>Update <a href="https://snakepipes.readthedocs.io/en/latest/content/running_snakePipes.html#genome-configuration-file">Genome configuration file</a> with path to indices and annotations.</li>
<li>Move to this repository and run the example <strong>command.sh</strong></li>
</ul>
https://doi.org/10.5281/zenodo.3707259
oai:zenodo.org:3707259
Zenodo
https://doi.org/10.5281/zenodo.1346302
info:eu-repo/semantics/openAccess
Creative Commons Attribution Share Alike 4.0 International
https://creativecommons.org/licenses/by-sa/4.0/legalcode
Test data for running snakePipes : DNA-mapping workflow
info:eu-repo/semantics/other