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Test data for running snakePipes : DNA-mapping workflow

Bhardwaj, Vivek; Heyne, Steffen; Ryan, Devon P; Manke, Thomas


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{
  "description": "<p><strong>Test files for running snakePipes workflows</strong></p>\n\n<p><strong>snakePipes</strong> are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to <a href=\"https://snakepipes.readthedocs.io/en/latest/\">this link</a>&nbsp;for further information on snakePipes.</p>\n\n<p>This folder contains test files that can be used to run DNA-mapping workflow under snakePipes. To test the workflow, follow the following steps :&nbsp;</p>\n\n<ul>\n\t<li>Download or prepare genome fasta, indices and annotations for human (<strong>hg38</strong>) genome.</li>\n\t<li>Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes`</li>\n\t<li>Update <a href=\"https://snakepipes.readthedocs.io/en/latest/content/running_snakePipes.html#genome-configuration-file\">Genome configuration file</a>&nbsp;with path to indices and annotations.</li>\n\t<li>Move to this repository and run the example <strong>command.sh</strong></li>\n</ul>", 
  "license": "https://creativecommons.org/licenses/by-sa/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "Max Planck Institute of Immunobiology and Epigenetics", 
      "@id": "https://orcid.org/0000-0002-5570-9338", 
      "@type": "Person", 
      "name": "Bhardwaj, Vivek"
    }, 
    {
      "affiliation": "Max Planck Institute of Immunobiology and Epigenetics", 
      "@type": "Person", 
      "name": "Heyne, Steffen"
    }, 
    {
      "affiliation": "Max Planck Institute of Immunobiology and Epigenetics", 
      "@type": "Person", 
      "name": "Ryan, Devon P"
    }, 
    {
      "affiliation": "Max Planck Institute of Immunobiology and Epigenetics", 
      "@type": "Person", 
      "name": "Manke, Thomas"
    }
  ], 
  "url": "https://zenodo.org/record/3707259", 
  "datePublished": "2018-08-21", 
  "version": "1.0.0", 
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  "identifier": "https://doi.org/10.5281/zenodo.3707259", 
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  "@type": "Dataset", 
  "name": "Test data for running snakePipes : DNA-mapping workflow"
}
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