Dataset Open Access

Test data for running snakePipes : DNA-mapping workflow

Bhardwaj, Vivek; Heyne, Steffen; Ryan, Devon P; Manke, Thomas


Citation Style Language JSON Export

{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.3707259", 
  "title": "Test data for running snakePipes : DNA-mapping workflow", 
  "issued": {
    "date-parts": [
      [
        2018, 
        8, 
        21
      ]
    ]
  }, 
  "abstract": "<p><strong>Test files for running snakePipes workflows</strong></p>\n\n<p><strong>snakePipes</strong> are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to <a href=\"https://snakepipes.readthedocs.io/en/latest/\">this link</a>&nbsp;for further information on snakePipes.</p>\n\n<p>This folder contains test files that can be used to run DNA-mapping workflow under snakePipes. To test the workflow, follow the following steps :&nbsp;</p>\n\n<ul>\n\t<li>Download or prepare genome fasta, indices and annotations for human (<strong>hg38</strong>) genome.</li>\n\t<li>Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes`</li>\n\t<li>Update <a href=\"https://snakepipes.readthedocs.io/en/latest/content/running_snakePipes.html#genome-configuration-file\">Genome configuration file</a>&nbsp;with path to indices and annotations.</li>\n\t<li>Move to this repository and run the example <strong>command.sh</strong></li>\n</ul>", 
  "author": [
    {
      "family": "Bhardwaj, Vivek"
    }, 
    {
      "family": "Heyne, Steffen"
    }, 
    {
      "family": "Ryan, Devon P"
    }, 
    {
      "family": "Manke, Thomas"
    }
  ], 
  "version": "1.0.0", 
  "type": "dataset", 
  "id": "3707259"
}
561
506
views
downloads
All versions This version
Views 561279
Downloads 506261
Data volume 72.3 GB36.4 GB
Unique views 511247
Unique downloads 16596

Share

Cite as