Dataset Open Access
Test data for running snakePipes : DNA-mapping workflow
Bhardwaj, Vivek;
Heyne, Steffen;
Ryan, Devon P;
Manke, Thomas
Test files for running snakePipes workflows
snakePipes are pipelines built using snakemake and python for the analysis of epigenomic datasets. Please refer to this link for further information on snakePipes.
This folder contains test files that can be used to run DNA-mapping workflow under snakePipes. To test the workflow, follow the following steps :
- Download or prepare genome fasta, indices and annotations for human (hg38) genome.
- Download and install snakePipes via `conda create -n snakePipes -c mpi-ie -c bioconda -c conda-forge snakePipes`
- Update Genome configuration file with path to indices and annotations.
- Move to this repository and run the example command.sh
Files
(1.6 GB)
| Name | Size | |
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command.sh
md5:2a508dc92bff89c7d7458d39a63f59dc |
193 Bytes | Download |
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SRR6761495_R1.fastq.gz
md5:a00dae9845bf1ba24a1d258db31f6d0e |
129.8 MB | Download |
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SRR6761495_R2.fastq.gz
md5:4b6ba6afc9c72ccfdb766783351949e1 |
183.9 MB | Download |
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SRR6761497_R1.fastq.gz
md5:226ecc2e9313ad96cdd1b2e5ea74c5a3 |
202.2 MB | Download |
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SRR6761497_R2.fastq.gz
md5:fd478752920b64a9eef8576839f50d33 |
273.4 MB | Download |
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SRR6761499_R1.fastq.gz
md5:50aab06dd0a6b842dbfedd0cc7b1c1a8 |
189.4 MB | Download |
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SRR6761499_R2.fastq.gz
md5:b5431fcdc211cb15d289d2d531235fae |
245.1 MB | Download |
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SRR6761502_R1.fastq.gz
md5:0f121fc15acca740bf1a1a9a25b1c0ab |
182.2 MB | Download |
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SRR6761502_R2.fastq.gz
md5:94090ae368d2f1f979042d500c26d1f6 |
221.8 MB | Download |
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| Views | 751 | 451 |
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| Data volume | 120.1 GB | 84.2 GB |
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| Unique downloads | 247 | 177 |
Indexed in
- Publication date:
- August 21, 2018
- DOI:
-
- License (for files):
- Creative Commons Attribution Share Alike 4.0 International