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ProGene - A Large-scale, High-Quality Protein-Gene Annotated Benchmark Corpus

Faessler, Erik; Modersohn, Luise; Lohr, Christina; Hahn, Udo


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  <dc:creator>Faessler, Erik</dc:creator>
  <dc:creator>Modersohn, Luise</dc:creator>
  <dc:creator>Lohr, Christina</dc:creator>
  <dc:creator>Hahn, Udo</dc:creator>
  <dc:date>2020-03-12</dc:date>
  <dc:description>The Pro(tein)/Gene corpus was developed at the JULIE Lab Jena under supervision of Prof. Udo Hahn.

The goals of the annotation project were


	to construct a consistent and (as far as possible) subdomain-independent/-comprehensive protein-annotated corpus
	to differentiate between protein families and groups, protein complexes, protein molecules, protein variants (e.g. alleles) and elliptic enumerations of proteins.


The corpus has the following annotation levels / entity types:


	protein
	protein_familiy_or_group
	protein_complex
	protein_variant
	protein_enum


For definitions of the annotation levels, please refer to the Proteins-guidelines-final.doc file that is found in the download package.

To achieve a large coverage of biological subdomains, document from multiple other protein / gene corpora were reannotated. For further coverage, new document sets were created. All documents are abstracts from PubMed/MEDLINE. The corpus is made up of the union of all the documents in the different subcorpora.
All document are delivered as MMAX2 (http://mmax2.net/) annotation projects.</dc:description>
  <dc:identifier>https://zenodo.org/record/3698568</dc:identifier>
  <dc:identifier>10.5281/zenodo.3698568</dc:identifier>
  <dc:identifier>oai:zenodo.org:3698568</dc:identifier>
  <dc:language>eng</dc:language>
  <dc:relation>doi:10.5281/zenodo.3698567</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/julie-lab</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:subject>Genes and proteins</dc:subject>
  <dc:subject>text corpus</dc:subject>
  <dc:subject>annotation</dc:subject>
  <dc:subject>biomedical corpus</dc:subject>
  <dc:title>ProGene - A Large-scale, High-Quality Protein-Gene Annotated Benchmark Corpus</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
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