Published February 10, 2020
| Version 1.1.0
Software
Open
nf-core/rnafusion: nf-core/rnafusion:1.1.0
Creators
- 1. @SciLifeLab | Karolinska Institutet
- 2. Science for Life Laboratory
- 3. Karolinska Institutet
- 4. Karolinska Institutet | Science for Life Laboratory
Description
v1.1.0 - 2020/02/10
- Fusion gene detection tools:
Arriba v1.1.0
Ericscript v0.5.5
Fusioncatcher v1.20
Pizzly v0.37.3
Squid v1.5
STAR-Fusion v1.6.0
- Visualization tools:
Arriba v1.1.0
FusionInspector v1.3.1
- Other tools:
fusion-report v2.0.1
FastQ v0.11.8
MultiQC v1.7
STAR aligner v2.7.0f
- Updated examples and configurations
- Upgraded
fusion-report v1.0.0
tofusion-report v2.0.1
- Divided
running_tools
into fusion and visualization tools - Updated
STAR
inSquid
,Fusion-Inspector
version to2.7.0f
- Upgraded
STAR-Fusion v1.5.0
toSTAR-Fusion v1.6.0
#83 - Parameter
igenomesIgnore
renamed toigenome
#81 - Finished STAR-Fusion file renaming #18
- Updated logos
- Updated to nf-core
1.8
TEMPLATE
- Variables
pizzly_fasta
andpizzly_gtf
have been removed and replaced withtranscript
andgtf
Jenkisfile
, test configuration, pylintrc configuration- Removed
igenomes.config
because the pipeline only supportsEnsembl
version
Files
nf-core/rnafusion-1.1.0.zip
Files
(418.4 kB)
Name | Size | Download all |
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Additional details
Related works
- Is supplement to
- https://github.com/nf-core/rnafusion/tree/1.1.0 (URL)