Quartet-1.1.0.zip
ms609-Quartet-b1204ba
.Rbuildignore
228 Bytes
.covrignore
22 Bytes
.gitattributes
42 Bytes
.gitignore
406 Bytes
.travis.yml
1.6 kB
.zenodo.json
541 Bytes
DESCRIPTION
2.0 kB
NAMESPACE
2.7 kB
NEWS.md
1.7 kB
Quartet.Rproj
497 Bytes
R
Metrics.R
11.0 kB
PartitionDistance.R
6.9 kB
QuartetDistance.R
9.6 kB
RcppExports.R
4.0 kB
ResolvedQuartets.R
2.5 kB
TernaryPoints.R
3.8 kB
data.R
1.5 kB
tqDist.r
14.6 kB
zzz.R
552 Bytes
README.md
2.8 kB
_config.yml
27 Bytes
codemeta.json
10.7 kB
cran-comments.md
1.0 kB
data
sq_trees.rda
812 Bytes
data-raw
sq_trees.R
1.9 kB
inst
CITATION
2.5 kB
Get_stuck_in.md
1.6 kB
REFERENCES.bib
6.2 kB
WORDLIST
275 Bytes
preamble.tex
127 Bytes
trees
all_quartets.new
56 Bytes
five_trees.new
72 Bytes
none.new
11 Bytes
one_quartet_twice.new
30 Bytes
quartet1.new
15 Bytes
quartet2.new
14 Bytes
quartet_unresolved.new
11 Bytes
test_tree1.new
126 Bytes
test_tree2.new
26 Bytes
test_tree3.new
608 Bytes
test_tree4.new
608 Bytes
tree_ab-c.new
10 Bytes
tree_ac-b.new
10 Bytes
two_quartets.new
30 Bytes
two_trees.new
216 Bytes
unresolved1.new
16 Bytes
unresolved2.new
18 Bytes
unresolved_list.new
78 Bytes
man
AllQuartets.Rd
1.1 kB
CompareQuartets.Rd
2.0 kB
CompareSplits.Rd
2.2 kB
Distances.Rd
3.3 kB
PairSharedQuartetStatus.Rd
1.6 kB
PairSharedSplitStatus.Rd
847 Bytes
PlotQuartet.Rd
1.5 kB
QuartetPoints.Rd
2.7 kB
QuartetState.Rd
2.4 kB
QuartetStatus.Rd
5.4 kB
ResolvedQuartets.Rd
1.4 kB
SimilarityMetrics.Rd
5.4 kB
SplitStatus.Rd
3.2 kB
SymmetricDifferenceLineEnds.Rd
1.1 kB
TQDist.Rd
1.9 kB
TQFile.Rd
490 Bytes
ValidateQuartetFile.Rd
639 Bytes
dot-AddSlice.Rd
667 Bytes
dot-NormalizeStatus.Rd
780 Bytes
dot-StatusToMatrix.Rd
1.4 kB
sq_trees.Rd
1.8 kB
tqdist_QuartetDistance.Rd
3.3 kB
man-roxygen
MRS.R
102 Bytes
elementStatusParam.R
252 Bytes
refTqDist.R
238 Bytes
returnEstabrook.R
622 Bytes
splitsParam.R
117 Bytes
treeParam.R
67 Bytes
treesCfParam.R
161 Bytes
treesParam.R
113 Bytes
src
AbstractDistanceCalculator.cpp
4.2 kB
AbstractDistanceCalculator.h
532 Bytes
EdgeParser.cpp
1.4 kB
HDT.cpp
9.8 kB
HDTCountingCCToC.cpp
28.6 kB
HDTCountingCTransform.cpp
3.7 kB
HDTCountingG.cpp
20.0 kB
HDTCountingIGToC.cpp
7.5 kB
HDTCountingLeaf.cpp
4.1 kB
HDTFactory.cpp
5.0 kB
HDTListUtils.cpp
1.9 kB
NewickParser.cpp
6.7 kB
QuartetDistanceCalculator.cpp
14.2 kB
QuartetDistanceCalculator.h
3.3 kB
RcppExports.cpp
11.1 kB
RootedTree.cpp
6.0 kB
RootedTreeFactory.cpp
2.5 kB
TripletDistanceCalculator.cpp
4.4 kB
TripletDistanceCalculator.h
1.3 kB
counting_linked_list.h
5.4 kB
counting_linked_list_num_only.h
877 Bytes
edge_parser.h
591 Bytes
hdt.h
4.6 kB
hdt_factory.h
1.1 kB
int_stuff.cpp
23 Bytes
int_stuff.h
365 Bytes
memory_allocator.h
1.8 kB
newick_parser.h
825 Bytes
quartet_calc.h
359 Bytes
rQuartetDist.cpp
9.8 kB
rTripletDist.cpp
2.4 kB
rooted_tree.h
1.2 kB
rooted_tree_factory.h
702 Bytes
templated_linked_list.h
265 Bytes
triplet_calc.h
271 Bytes
unrooted_tree.h
3.0 kB
util.h
383 Bytes
tests
figs
deps.txt
67 Bytes
quartetdistance-r
plotquartet.svg
42.4 kB
testthat
test-1-tqdist.R
4.9 kB
test-PartitionDistance.R
2.3 kB
test-QuartetDistance.R
2.1 kB
test-ResolvedQuartets.R
496 Bytes
test-TernaryPoints.R
2.3 kB
test-ZZZ-Metrics.R
7.2 kB
testthat.R
58 Bytes
vignettes
Critical-distances.Rmd
3.4 kB
Tree-distance-metrics.Rmd
4.1 kB