immunarch 0.5.5
  • Get started
  • Tutorials
    • First steps
    • Introduction to immunarch
    • Working with data in immunarch
    • Basic analysis and clonality
    • Explore and compare repertoires
    • Repertoire overlap and public clonotypes
    • Gene usage analysis
    • Diversity estimation
    • Annotate clonotypes using immune receptor databases
    • Preparing to publication
    • Make your plots publication-ready with fixVis
    • Advanced methods
    • Tracking clonotypes across time points
    • Kmer and sequence motif analysis and visualisation
  • Reference
  • Changelog
  • ImmunoMind

Articles

All tutorials

  • Introduction to `immunarch`
  • Working with data in `immunarch`
  • Basic analysis and clonality
  • Repertoire overlap and public clonotypes
  • Gene usage analysis
  • Diversity estimation
  • Make your plots publication-ready with fixVis
  • Tracking clonotypes across time points in `immunarch`
  • Kmer and sequence motif analysis and visualisation
  • Annotate clonotypes using immune receptor databases

Developed by Vadim I. Nazarov, Vasily O. Tsvetkov, Eugene Rumynskiy, Anna Lorenc, Daniel J. Moore, Victor Greiff, ImmunoMind.

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