UPDATE: Zenodo migration postponed to Oct 13 from 06:00-08:00 UTC. Read the announcement.

Software documentation Open Access

Jaqpot 5: How to simulate biodistribution scenarios using custom PBPK models

Haralambos Sarimveis


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.3610182">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Text"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.3610182</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.3610182"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Haralambos Sarimveis</foaf:name>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>School of Chemical Engineering</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Jaqpot 5: How to simulate biodistribution scenarios using custom PBPK models</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2020</dct:issued>
    <dcat:keyword>Machine learning</dcat:keyword>
    <dcat:keyword>Biokinetics</dcat:keyword>
    <dcat:keyword>ChemInformatics</dcat:keyword>
    <dcat:keyword>NanoInformatics</dcat:keyword>
    <frapo:isFundedBy rdf:resource="info:eu-repo/grantAgreement/EC/H2020/731032/"/>
    <schema:funder>
      <foaf:Organization>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/100010661</dct:identifier>
        <foaf:name>European Commission</foaf:name>
      </foaf:Organization>
    </schema:funder>
    <frapo:isFundedBy rdf:resource="info:eu-repo/grantAgreement/EC/H2020/731075/"/>
    <schema:funder>
      <foaf:Organization>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/100010661</dct:identifier>
        <foaf:name>European Commission</foaf:name>
      </foaf:Organization>
    </schema:funder>
    <dcat:contactPoint>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-8607-9965">
        <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Individual"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-8607-9965</dct:identifier>
        <vcard:fn>Haralambos Sarimveis</vcard:fn>
        <vcard:given-name/>
        <vcard:family-name/>
        <vcard:organization-name>School of Chemical Engineering</vcard:organization-name>
      </rdf:Description>
    </dcat:contactPoint>
    <dcat:contactPoint>
      <rdf:Description>
        <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Individual"/>
        <vcard:fn>Pantelis Karatzas</vcard:fn>
        <vcard:given-name/>
        <vcard:family-name/>
        <vcard:organization-name>School of Chemical Engineering</vcard:organization-name>
      </rdf:Description>
    </dcat:contactPoint>
    <dcat:contactPoint>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-0628-8434">
        <rdf:type rdf:resource="http://www.w3.org/2006/vcard/ns#Individual"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-0628-8434</dct:identifier>
        <vcard:fn>Philip Doganis</vcard:fn>
        <vcard:given-name/>
        <vcard:family-name/>
        <vcard:organization-name>School of Chemical Engineering</vcard:organization-name>
      </rdf:Description>
    </dcat:contactPoint>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2020-01-16</dct:issued>
    <owl:sameAs rdf:resource="https://zenodo.org/record/3610182"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/3610182</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.3610181"/>
    <dct:isPartOf rdf:resource="https://zenodo.org/communities/nanocommons"/>
    <dct:description>&lt;p&gt;Jaqpot 5 is a user-friendly web-based e-infrastructure that allows model developers to deploy their predictive models and share them through the web. The Jaqpot 5 GUI&amp;nbsp; directs the model developers to further document their models in a way that can be easily understood and used by end-users with little or no experience on machine learning and statistical analysis.&amp;nbsp;&amp;nbsp; The GUI also allows the end-users to apply the models on their own data for validation and/or prediction purposes and the results are collected and visualised in automatically generated tables, graphs and reports. All major machine learning and statistical data-driven algorithms are supported in Jaqpot 5,&amp;nbsp; by integrating popular libraries such as the Python Scikit-learn and the R Caret libraries. Jaqpot 5 has been designed as a generic modelling and machine learning web platform, but particular emphasis is given on serving the needs of the chemo/bio/nano/pharma/ communities by integrating QSAR, biokinetics, dose-response and read-across models.&amp;nbsp; Jaqpot 5 has been developed by the &lt;a href="https://www.chemeng.ntua.gr/labs/control_lab/index.html"&gt;Unit of Process Control and Informatics&lt;/a&gt; in the School of Chemical Engineering at the National Technical University of Athens.&lt;/p&gt; &lt;p&gt;&amp;nbsp;&lt;/p&gt; &lt;p&gt;This document provides a tutorial for simulating biodistribution scenarios using custom PBPK models that have been deployed on Jaqpot5. The resource has been made available at &lt;a href="https://app.jaqpot.org/"&gt;https://app.jaqpot.org/&lt;/a&gt;.&lt;/p&gt;</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.3610182"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.3610182"/>
        <dcat:byteSize>1278256</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/3610182/files/JPQ5_UI_TUTORIAL_NTUA_PBPK.pdf"/>
        <dcat:mediaType>application/pdf</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
  <foaf:Project rdf:about="info:eu-repo/grantAgreement/EC/H2020/731032/">
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">731032</dct:identifier>
    <dct:title>The European Nanotechnology Community Informatics Platform: Bridging data and disciplinary gaps for industry and regulators (NanoCommons)</dct:title>
    <frapo:isAwardedBy>
      <foaf:Organization>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/100010661</dct:identifier>
        <foaf:name>European Commission</foaf:name>
      </foaf:Organization>
    </frapo:isAwardedBy>
  </foaf:Project>
  <foaf:Project rdf:about="info:eu-repo/grantAgreement/EC/H2020/731075/">
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">731075</dct:identifier>
    <dct:title>OpenRiskNet: Open e-Infrastructure to Support Data Sharing, Knowledge Integration and in silico Analysis and Modelling in Risk Assessment</dct:title>
    <frapo:isAwardedBy>
      <foaf:Organization>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/100010661</dct:identifier>
        <foaf:name>European Commission</foaf:name>
      </foaf:Organization>
    </frapo:isAwardedBy>
  </foaf:Project>
</rdf:RDF>
285
171
views
downloads
All versions This version
Views 285285
Downloads 171171
Data volume 218.6 MB218.6 MB
Unique views 268268
Unique downloads 165165

Share

Cite as