Dataset Open Access

Reactome HSA v71 pathways and hierarchy

Richard Tjörnhammar; Edward Tjörnhammar


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    <subfield code="a">&lt;p&gt;Originally from:&lt;strong&gt; https://reactome.org/download-data&lt;/strong&gt;&lt;br&gt;
Version 71: &lt;strong&gt;https://reactome.org/about/news/145-version-71-releases&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;What was done here:&lt;br&gt;
Top pathways found in &lt;strong&gt;https://reactome.org/PathwayBrowser/&lt;/strong&gt; were manually added as children to the parent R-HSA-0000000 in the file &amp;quot;NewestReactomeNodeRelations.txt&amp;quot;. These top pathway descriptions were also added to the file &amp;quot;Top_Human_REACTOME_Nodes_ManualCuration.txt&amp;quot;&lt;/p&gt;

&lt;p&gt;The rest of the pathway parent child relationships were taken from:&lt;br&gt;
&lt;strong&gt;https://reactome.org/download/current/ReactomePathwaysRelation.txt&lt;/strong&gt;&lt;br&gt;
but only the R-HSA pathways were used and added to the file &amp;quot;NewestReactomeNodeRelations.txt&amp;quot;&lt;/p&gt;

&lt;p&gt;The pathway definitions are the ones found in&lt;br&gt;
&amp;quot;Ensembl2Reactome_All_Levels_v71.txt&amp;quot;&lt;br&gt;
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