Dataset Open Access

Reactome HSA v71 pathways and hierarchy

Richard Tjörnhammar; Edward Tjörnhammar


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  <dc:creator>Richard Tjörnhammar</dc:creator>
  <dc:creator>Edward Tjörnhammar</dc:creator>
  <dc:date>2020-01-15</dc:date>
  <dc:description>Originally from: https://reactome.org/download-data
Version 71: https://reactome.org/about/news/145-version-71-releases

What was done here:
Top pathways found in https://reactome.org/PathwayBrowser/ were manually added as children to the parent R-HSA-0000000 in the file "NewestReactomeNodeRelations.txt". These top pathway descriptions were also added to the file "Top_Human_REACTOME_Nodes_ManualCuration.txt"

The rest of the pathway parent child relationships were taken from:
https://reactome.org/download/current/ReactomePathwaysRelation.txt
but only the R-HSA pathways were used and added to the file "NewestReactomeNodeRelations.txt"

The pathway definitions are the ones found in
"Ensembl2Reactome_All_Levels_v71.txt"
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  <dc:identifier>https://zenodo.org/record/3608712</dc:identifier>
  <dc:identifier>10.5281/zenodo.3608712</dc:identifier>
  <dc:identifier>oai:zenodo.org:3608712</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.3608711</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:title>Reactome HSA v71 pathways and hierarchy</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
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