Dataset Open Access

Reactome HSA v71 pathways and hierarchy

Richard Tjörnhammar; Edward Tjörnhammar


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  <identifier identifierType="DOI">10.5281/zenodo.3608712</identifier>
  <creators>
    <creator>
      <creatorName>Richard Tjörnhammar</creatorName>
    </creator>
    <creator>
      <creatorName>Edward Tjörnhammar</creatorName>
    </creator>
  </creators>
  <titles>
    <title>Reactome HSA v71 pathways and hierarchy</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <dates>
    <date dateType="Issued">2020-01-15</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3608712</alternateIdentifier>
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  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3608711</relatedIdentifier>
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  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Originally from:&lt;strong&gt; https://reactome.org/download-data&lt;/strong&gt;&lt;br&gt;
Version 71: &lt;strong&gt;https://reactome.org/about/news/145-version-71-releases&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;What was done here:&lt;br&gt;
Top pathways found in &lt;strong&gt;https://reactome.org/PathwayBrowser/&lt;/strong&gt; were manually added as children to the parent R-HSA-0000000 in the file &amp;quot;NewestReactomeNodeRelations.txt&amp;quot;. These top pathway descriptions were also added to the file &amp;quot;Top_Human_REACTOME_Nodes_ManualCuration.txt&amp;quot;&lt;/p&gt;

&lt;p&gt;The rest of the pathway parent child relationships were taken from:&lt;br&gt;
&lt;strong&gt;https://reactome.org/download/current/ReactomePathwaysRelation.txt&lt;/strong&gt;&lt;br&gt;
but only the R-HSA pathways were used and added to the file &amp;quot;NewestReactomeNodeRelations.txt&amp;quot;&lt;/p&gt;

&lt;p&gt;The pathway definitions are the ones found in&lt;br&gt;
&amp;quot;Ensembl2Reactome_All_Levels_v71.txt&amp;quot;&lt;br&gt;
&amp;nbsp;&lt;/p&gt;</description>
  </descriptions>
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