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ufz/ogs 6.2.2

Dmitry Yu. Naumov; Tom Fischer; Lars Bilke; Karsten Rink; Christoph Lehmann; Norihiro Watanabe; wenqing; renchao.lu; Norbert Grunwald; Yonghui56; jbathmann; Chaofan Chen; HBShaoUFZ; FZill; xingyuanmiao; ShuangChen88; boyanmeng; Marc Walther; joboog; Tianyuan Zheng; KeitaYoshioka; ZhangNing; ThieJan; fparisio; joergbuchwald; ogsbot; nagelt; NoCodeYet; carolinh


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  <dc:creator>Dmitry Yu. Naumov</dc:creator>
  <dc:creator>Tom Fischer</dc:creator>
  <dc:creator>Lars Bilke</dc:creator>
  <dc:creator>Karsten Rink</dc:creator>
  <dc:creator>Christoph Lehmann</dc:creator>
  <dc:creator>Norihiro Watanabe</dc:creator>
  <dc:creator>wenqing</dc:creator>
  <dc:creator>renchao.lu</dc:creator>
  <dc:creator>Norbert Grunwald</dc:creator>
  <dc:creator>Yonghui56</dc:creator>
  <dc:creator>jbathmann</dc:creator>
  <dc:creator>Chaofan Chen</dc:creator>
  <dc:creator>HBShaoUFZ</dc:creator>
  <dc:creator>FZill</dc:creator>
  <dc:creator>xingyuanmiao</dc:creator>
  <dc:creator>ShuangChen88</dc:creator>
  <dc:creator>boyanmeng</dc:creator>
  <dc:creator>Marc Walther</dc:creator>
  <dc:creator>joboog</dc:creator>
  <dc:creator>Tianyuan Zheng</dc:creator>
  <dc:creator>KeitaYoshioka</dc:creator>
  <dc:creator>ZhangNing</dc:creator>
  <dc:creator>ThieJan</dc:creator>
  <dc:creator>fparisio</dc:creator>
  <dc:creator>joergbuchwald</dc:creator>
  <dc:creator>ogsbot</dc:creator>
  <dc:creator>nagelt</dc:creator>
  <dc:creator>NoCodeYet</dc:creator>
  <dc:creator>carolinh</dc:creator>
  <dc:date>2020-01-04</dc:date>
  <dc:description>Features
Other process' changes

Surface sorption / desorption process implemented. #2658
Tag to fix amount of a KineticReactant in ChemistryLib. #2638
Replaced the material parameters of ThermoHydroMechanicsProcess with MPL. #2614
Explicit tag to set initial stresses in SmallDeformation, ThermoMechancis, HydroMechanics, and RichardsMechanics processes. #2635
Invoke material parameters that are associated with component transport process from MPL. #2646
Integrated another Phreeqc interface using direct memory access approach for reactive transport modeling. #2640 
Replaced the specific material properties of TwoPhaseFlowWithPP with generalized MPL. #2644
Pass dt through interfaces instead of storage in process' data or coupled solutions. #2673

Numerics

Generalized implementation for specification of the non-equilibrium initial states. #2633
Bulk element point mapping for tetrahedrons added. #2662
Repeat time step if assembly failed. Specifically for MFront material models if the integration fails, the time step will be repeated given adaptive time stepping scheme. #2730

Boundary condition

Add possibility to specify 'lower' dimensional Robin/Neumann boundary conditions. #2710

Source term

Line source terms are available. #2685

Input and output

[HT] Test if all the needed material properties read from project file. #2727
Extend internal state variables (MFront) output to TM, RM, and HM. #2732

Material models

New ParameterProperty can be used for heterogeneous spatial distributed MPL properties. #2616, #2683
Include MFrontGenericInterface as submodule and update to version tfel-3.2.1. #2631
Add Mohr-Coulomb-Abbo-Sloan (and its orthotropic version) to MFront material models. #2634
Extend LinearProperty for linear dependency upon multiple dependent variables. #2649
New IdealGasLaw MPL property for pure phases consisting of ideal gases. #2651
New MPL property Saturation based on the Brooks and Corey material model. #2652
New MPL property Relative Permeability based on the Brooks and Corey material model. #2656
New MPL properties Saturation and Relative Permeability according to the original Liakopoulos multiphase flow experiment. #2657

File I/O

A no longer used RapidStnInterface for stn files is dropped. The used XmlStnInterface remains. #2609

New tools

command line utility to interpolate equidistant raster files between two boundary rasters (for vertical refinement of subsurface layers). #2621
command line utility to convert 2D meshes into ESRI shape files. #2627
command line utility to conver netCDF-files into OGS meshes. #2654
command line utility for for 3D mesh to grid conversion. #2704

Other notable code changes

Split BuildInfo from BaseLib into separate libs to reduce re-linking after changes in the info variables. #2625
Remove almost unused "named functions". #2708

Infrastructure

Update tetgen to version 1.5.1 released on 18. of August 2018. #2618
Add options to enable gcc sanitizer flags. #2706

Jenkins

Builds Singularity container with OGS compiled for different MPI versions on master, #2628
Run benchmarks in Singularity container, #2648

CMake options changes

Added option to set OGS_BUILD_PROCESSES=OFF to disable building of all processes. #2752

Web / Docs

Added links to latest benchmark pages to homepage, added sticky navigation. #2620
Website is now fully built (including generation of CSS and JS files) by Netlify, #2731

Version info

Hugo 0.60.1 (for website generation). #2731
Conan 1.21.0, #2654, #2756
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  <dc:identifier>https://zenodo.org/record/3597561</dc:identifier>
  <dc:identifier>10.5281/zenodo.3597561</dc:identifier>
  <dc:identifier>oai:zenodo.org:3597561</dc:identifier>
  <dc:relation>url:https://github.com/ufz/ogs/tree/6.2.2</dc:relation>
  <dc:relation>doi:10.5281/zenodo.591265</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>ufz/ogs 6.2.2</dc:title>
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