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ufz/ogs 6.2.2

Dmitry Yu. Naumov; Tom Fischer; Lars Bilke; Karsten Rink; Christoph Lehmann; Norihiro Watanabe; wenqing; renchao.lu; Norbert Grunwald; Yonghui56; jbathmann; Chaofan Chen; HBShaoUFZ; FZill; xingyuanmiao; ShuangChen88; boyanmeng; Marc Walther; joboog; Tianyuan Zheng; KeitaYoshioka; ZhangNing; ThieJan; fparisio; joergbuchwald; ogsbot; nagelt; NoCodeYet; carolinh


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  <identifier identifierType="DOI">10.5281/zenodo.3597561</identifier>
  <creators>
    <creator>
      <creatorName>Dmitry Yu. Naumov</creatorName>
      <affiliation>Helmholtz Centre for Environmental Research -- UFZ</affiliation>
    </creator>
    <creator>
      <creatorName>Tom Fischer</creatorName>
    </creator>
    <creator>
      <creatorName>Lars Bilke</creatorName>
      <affiliation>Helmholtz Centre for Environmental Research</affiliation>
    </creator>
    <creator>
      <creatorName>Karsten Rink</creatorName>
    </creator>
    <creator>
      <creatorName>Christoph Lehmann</creatorName>
      <affiliation>Helmholtz-Zentrum für Umweltforschung</affiliation>
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    <creator>
      <creatorName>Norihiro Watanabe</creatorName>
      <affiliation>AIST</affiliation>
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    <creator>
      <creatorName>wenqing</creatorName>
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      <affiliation>Helmholtz-Zentrum für Umweltforschung</affiliation>
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    <creator>
      <creatorName>Norbert Grunwald</creatorName>
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    <creator>
      <creatorName>Yonghui56</creatorName>
    </creator>
    <creator>
      <creatorName>jbathmann</creatorName>
    </creator>
    <creator>
      <creatorName>Chaofan Chen</creatorName>
      <affiliation>UFZ</affiliation>
    </creator>
    <creator>
      <creatorName>HBShaoUFZ</creatorName>
    </creator>
    <creator>
      <creatorName>FZill</creatorName>
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    <creator>
      <creatorName>xingyuanmiao</creatorName>
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    <creator>
      <creatorName>ShuangChen88</creatorName>
    </creator>
    <creator>
      <creatorName>boyanmeng</creatorName>
    </creator>
    <creator>
      <creatorName>Marc Walther</creatorName>
    </creator>
    <creator>
      <creatorName>joboog</creatorName>
    </creator>
    <creator>
      <creatorName>Tianyuan Zheng</creatorName>
      <affiliation>@ufz</affiliation>
    </creator>
    <creator>
      <creatorName>KeitaYoshioka</creatorName>
    </creator>
    <creator>
      <creatorName>ZhangNing</creatorName>
    </creator>
    <creator>
      <creatorName>ThieJan</creatorName>
    </creator>
    <creator>
      <creatorName>fparisio</creatorName>
    </creator>
    <creator>
      <creatorName>joergbuchwald</creatorName>
      <affiliation>UFZ</affiliation>
    </creator>
    <creator>
      <creatorName>ogsbot</creatorName>
    </creator>
    <creator>
      <creatorName>nagelt</creatorName>
    </creator>
    <creator>
      <creatorName>NoCodeYet</creatorName>
    </creator>
    <creator>
      <creatorName>carolinh</creatorName>
    </creator>
  </creators>
  <titles>
    <title>ufz/ogs 6.2.2</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <dates>
    <date dateType="Issued">2020-01-04</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3597561</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/ufz/ogs/tree/6.2.2</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.591265</relatedIdentifier>
  </relatedIdentifiers>
  <version>6.2.2</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">Features
Other process' changes
&lt;ul&gt;
&lt;li&gt;Surface sorption / desorption process implemented. #2658&lt;/li&gt;
&lt;li&gt;Tag to fix amount of a KineticReactant in ChemistryLib. #2638&lt;/li&gt;
&lt;li&gt;Replaced the material parameters of ThermoHydroMechanicsProcess with MPL. #2614&lt;/li&gt;
&lt;li&gt;Explicit tag to set initial stresses in &lt;code&gt;SmallDeformation&lt;/code&gt;, &lt;code&gt;ThermoMechancis&lt;/code&gt;, &lt;code&gt;HydroMechanics&lt;/code&gt;, and &lt;code&gt;RichardsMechanics&lt;/code&gt; processes. #2635&lt;/li&gt;
&lt;li&gt;Invoke material parameters that are associated with &lt;code&gt;component transport process&lt;/code&gt; from MPL. #2646&lt;/li&gt;
&lt;li&gt;Integrated another Phreeqc interface using direct memory access approach for reactive transport modeling. #2640 &lt;/li&gt;
&lt;li&gt;Replaced the specific material properties of TwoPhaseFlowWithPP with generalized MPL. #2644&lt;/li&gt;
&lt;li&gt;Pass &lt;code&gt;dt&lt;/code&gt; through interfaces instead of storage in process' data or coupled solutions. #2673&lt;/li&gt;
&lt;/ul&gt;
Numerics
&lt;ul&gt;
&lt;li&gt;Generalized implementation for specification of the non-equilibrium initial states. #2633&lt;/li&gt;
&lt;li&gt;Bulk element point mapping for tetrahedrons added. #2662&lt;/li&gt;
&lt;li&gt;Repeat time step if assembly failed. Specifically for MFront material models if the integration fails, the time step will be repeated given adaptive time stepping scheme. #2730&lt;/li&gt;
&lt;/ul&gt;
Boundary condition
&lt;ul&gt;
&lt;li&gt;Add possibility to specify 'lower' dimensional Robin/Neumann boundary conditions. #2710&lt;/li&gt;
&lt;/ul&gt;
Source term
&lt;ul&gt;
&lt;li&gt;Line source terms are available. #2685&lt;/li&gt;
&lt;/ul&gt;
Input and output
&lt;ul&gt;
&lt;li&gt;[HT] Test if all the needed material properties read from project file. #2727&lt;/li&gt;
&lt;li&gt;Extend internal state variables (MFront) output to TM, RM, and HM. #2732&lt;/li&gt;
&lt;/ul&gt;
Material models
&lt;ul&gt;
&lt;li&gt;New ParameterProperty can be used for heterogeneous spatial distributed MPL properties. #2616, #2683&lt;/li&gt;
&lt;li&gt;Include MFrontGenericInterface as submodule and update to version tfel-3.2.1. #2631&lt;/li&gt;
&lt;li&gt;Add Mohr-Coulomb-Abbo-Sloan (and its orthotropic version) to MFront material models. #2634&lt;/li&gt;
&lt;li&gt;Extend &lt;code&gt;LinearProperty&lt;/code&gt; for linear dependency upon multiple dependent variables. #2649&lt;/li&gt;
&lt;li&gt;New &lt;code&gt;IdealGasLaw&lt;/code&gt; MPL property for pure phases consisting of ideal gases. #2651&lt;/li&gt;
&lt;li&gt;New MPL property &lt;code&gt;Saturation&lt;/code&gt; based on the Brooks and Corey material model. #2652&lt;/li&gt;
&lt;li&gt;New MPL property &lt;code&gt;Relative Permeability&lt;/code&gt; based on the Brooks and Corey material model. #2656&lt;/li&gt;
&lt;li&gt;New MPL properties &lt;code&gt;Saturation&lt;/code&gt; and &lt;code&gt;Relative Permeability&lt;/code&gt; according to the original Liakopoulos multiphase flow experiment. #2657&lt;/li&gt;
&lt;/ul&gt;
File I/O
&lt;ul&gt;
&lt;li&gt;A no longer used &lt;code&gt;RapidStnInterface&lt;/code&gt; for &lt;code&gt;stn&lt;/code&gt; files is dropped. The used &lt;code&gt;XmlStnInterface&lt;/code&gt; remains. #2609&lt;/li&gt;
&lt;/ul&gt;
New tools
&lt;ul&gt;
&lt;li&gt;command line utility to interpolate equidistant raster files between two boundary rasters (for vertical refinement of subsurface layers). #2621&lt;/li&gt;
&lt;li&gt;command line utility to convert 2D meshes into ESRI shape files. #2627&lt;/li&gt;
&lt;li&gt;command line utility to conver netCDF-files into OGS meshes. #2654&lt;/li&gt;
&lt;li&gt;command line utility for for 3D mesh to grid conversion. #2704&lt;/li&gt;
&lt;/ul&gt;
Other notable code changes
&lt;ul&gt;
&lt;li&gt;Split BuildInfo from BaseLib into separate libs to reduce re-linking after changes in the info variables. #2625&lt;/li&gt;
&lt;li&gt;Remove almost unused "named functions". #2708&lt;/li&gt;
&lt;/ul&gt;
Infrastructure
&lt;ul&gt;
&lt;li&gt;Update tetgen to version 1.5.1 released on 18. of August 2018. #2618&lt;/li&gt;
&lt;li&gt;Add options to enable gcc sanitizer flags. #2706&lt;/li&gt;
&lt;/ul&gt;
Jenkins
&lt;ul&gt;
&lt;li&gt;Builds Singularity container with OGS compiled for different MPI versions on master, #2628&lt;/li&gt;
&lt;li&gt;Run benchmarks in Singularity container, #2648&lt;/li&gt;
&lt;/ul&gt;
CMake options changes
&lt;ul&gt;
&lt;li&gt;Added option to set OGS_BUILD_PROCESSES=OFF to disable building of all processes. #2752&lt;/li&gt;
&lt;/ul&gt;
Web / Docs
&lt;ul&gt;
&lt;li&gt;Added links to latest benchmark pages to homepage, added sticky navigation. #2620&lt;/li&gt;
&lt;li&gt;Website is now fully built (including generation of CSS and JS files) by Netlify, #2731&lt;/li&gt;
&lt;/ul&gt;
Version info
&lt;ul&gt;
&lt;li&gt;Hugo 0.60.1 (for website generation). #2731&lt;/li&gt;
&lt;li&gt;Conan 1.21.0, #2654, #2756&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
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