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Published December 29, 2019 | Version 1.7.2
Software Open

nextgenusfs/funannotate: funannotate v1.7.2

Creators

  • 1. @RedVentures
  • 2. University of California-Riverside
  • 3. Harvard University

Description

  • busco internal run now uses the local augustus config path, so hopefully write access to $AUGUSTUS_CONFIG_PATH is no longer required
  • long reads are now processed to remove forward slashes from names if present -- this was causing problems with PASA #326 #250
  • added augustus hints file generation when using RNA-seq data. Also added a check for --transcript_evidence if found in --transcript_alignments, ie so extra transcripts can be added instead of only those used to generate alignments in funannotate train. #360
  • fix typo in funannotate check
  • fix for proteinortho issue in funannotate compare #350

Files

nextgenusfs/funannotate-1.7.2.zip

Files (492.0 kB)

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Additional details

Related works

Is supplement to
https://github.com/nextgenusfs/funannotate/tree/1.7.2 (URL)