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fmelinscak/coale-paper: Release accompanying the version of the paper accepted at PLOS CB

Filip Melinscak

This release accompanies the version of the paper that has been accepted at PLOS Computational Biology (https://doi.org/10.1371/journal.pcbi.1007593).

Changes
  • Optimization functionality moved into a separate function optimize_design which can be called directly from Matlab, without reference to external config files
  • fit_models modified such that it supports sequential model fitting (making dependency on the Parallel Computing Toolbox optional)
  • Added BIC annotation for figures featuring model selection
  • Added computation of odds ratios (ORs) for model selection scenarios
  • Added the tutorial notebook for Scenario 2
  • Linked to the Zenodo DOI and the PLOS CB DOI

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