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Dataset Open Access

Supplementary data and scripts for "An Atlas of Human Metabolism"

Robinson, Jonathan L.; Kocabaş, Pınar; Wang, Hao; Cholley, Pierre-Etienne; Cook, Daniel; Nilsson, Avlant; Anton, Mihail; Ferreira, Raphael; Domenzain, Iván; Billa, Virinchi; Limeta, Angelo; Hedin, Alex; Gustafsson, Johan; Kerkhoven, Eduard J.; Svensson, L. Thomas; Palsson, Bernhard O.; Mardinoglu, Adil; Hansson, Lena; Uhlén, Mathias; Nielsen, Jens

This repository contains the models, data, and scripts associated with the publication "An Atlas of Human Metabolism".

The content is divided into two main directories, each containing their own README file containing instructions.

  1. tINIT_GEMs - Contains the genome-scale metabolic models (GEMs) generated in the study using the tINIT algorithm, as well as many scripts and datasets necessary to reproduce model generation, analyses, and figures.
  2. ec_GEMs - Contains the enzyme-constrained models (ecGEMs) generated in the study using the GECKO framework, as well as many scripts and datasets necessary to reproduce model generation, analyses, and figures.
  3. GEM_PRO - Contains the GEM-PRO dataframe with the protein structure information associated with the Human1 model.

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