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rprev-dev-v1.0.3.zip

stulacy-rprev-dev-299158a
- .Rbuildignore 186 Bytes
- .gitignore 140 Bytes
- .travis.yml 87 Bytes
- DESCRIPTION 868 Bytes
- NAMESPACE 930 Bytes
- NEWS.md 4.5 kB
- R
  - data.R 2.0 kB
  - diagnostics.R 1.9 kB
  - fixedcure.R 8.0 kB
  - flexsurv.R 4.3 kB
  - homogeneous_poisson.R 5.5 kB
  - inc_model.R 1.1 kB
  - incidence.R 10.7 kB
  - point_estimate.R 3.8 kB
  - prevalence.R 24.4 kB
  - rprev.R 1.4 kB
  - surv_model.R 1.6 kB
  - survfit.prev.R 7.1 kB
  - survregmin.R 4.2 kB
  - test_custom_models.R 6.5 kB
  - utils.R 3.0 kB
- README.md 1.7 kB
- TODO 89 Bytes
- codecov.yml 15 Bytes
- cran-comments.md 475 Bytes
- data
  - UKmortality.rda 649.7 kB
  - prevsim.rda 16.1 kB
- man
  - UKmortality.Rd 940 Bytes
  - counted_prevalence.Rd 1.5 kB
  - draw_incident_population.Rd 1.2 kB
  - extract_covars.Rd 824 Bytes
  - fixed_cure.Rd 3.1 kB
  - plot.incdiag.Rd 1.0 kB
  - plot.survfit.prev.Rd 1.1 kB
  - predict_survival_probability.Rd 938 Bytes
  - prevalence.Rd 8.5 kB
  - prevsim.Rd 1.4 kB
  - rprev.Rd 1.4 kB
  - sim_prevalence.Rd 2.2 kB
  - summary.survfit.prev.Rd 1.5 kB
  - survfit.prevalence.Rd 1.1 kB
  - test_homogeneity.Rd 3.4 kB
  - test_prevalence_fit.Rd 1.1 kB
  - validate_incidence_model.Rd 924 Bytes
  - validate_survival_model.Rd 1.1 kB
- scripts
  - mortality.R 1.0 kB
- tests
  - testthat
    - cache
      - diagnostics
        
        prev_pval.rds 48 Bytes
        
        sim_check.rds 47 Bytes
        
        sim_check_100000.rds 55 Bytes
      - incidence
        
        incidence_1.rds 57 Bytes
        
        incidence_2.rds 51 Bytes
        
        incidence_3.rds 61 Bytes
        
        meanir_1.rds 134 Bytes
        
        meanir_2.rds 135 Bytes
        
        meanir_3.rds 128 Bytes
    - test_curemodels.R 3.7 kB
    - test_diagnostics.R 2.0 kB
    - test_incidence.R 864 Bytes
    - test_incidence_model.R 6.7 kB
    - test_prevalence.R 10.0 kB
    - test_survival_model.R 6.1 kB
  - testthat.R 54 Bytes
- vignettes
  - bibliography.bib 2.1 kB
  - diagnostics.Rmd 13.0 kB
  - diagram.pdf 67.4 kB
  - diagram.png 51.3 kB
  - user_guide.Rmd 27.5 kB