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dib-lab/dammit: dammit v1.2

Camille Scott; Tessa Pierce; Lisa K. Johnson; C. Titus Brown; Chaz Reid; The Gitter Badger; Luiz Irber

Fixes several major bugs / introduces improvements:

- updates TransDecoder and HMMER parsing for TransDecoder 5 (the "query_name" KeyError)
- uses peptide coordinates from longest_orfs.pep for remapping and introduces parser for it
- forces TransDecoder v5
- updates the MafParser to support erroneously inserted newlines (seems to show up against sprot)

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dib-lab/dammit-v1.2.zip
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