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Published December 10, 2019 | Version v1.2
Software Open

dib-lab/dammit: dammit v1.2

  • 1. @dib-lab
  • 2. University of California, Davis
  • 3. Gitter
  • 4. @dib-lab - @ucdavis

Description

Fixes several major bugs / introduces improvements:

- updates TransDecoder and HMMER parsing for TransDecoder 5 (the "query_name" KeyError)
- uses peptide coordinates from longest_orfs.pep for remapping and introduces parser for it
- forces TransDecoder v5
- updates the MafParser to support erroneously inserted newlines (seems to show up against sprot)

Files

dib-lab/dammit-v1.2.zip

Files (4.2 MB)

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md5:31a3bfff31d2f1383e93141263177f59
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Additional details

Related works