Case Sudy for "Integrated Geosciences Observatory: A software solution to remove barriers to collaboration and achieve computational reproducibility in geospace sciences"

Bhatt, Asti; Valentic, Todd; Reimer, Ashton; Lamarche, Leslie; Reyes, Pablo; Cosgrove, Russell

doi:10.5281/zenodo.3564835

December 5, 2019 Software Open Access

Case Sudy for "Integrated Geosciences Observatory: A software solution to remove barriers to collaboration and achieve computational reproducibility in geospace sciences"

Bhatt, Asti; Valentic, Todd; Reimer, Ashton; Lamarche, Leslie; Reyes, Pablo; Cosgrove, Russell

DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.3564835">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Software"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.3564835</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.3564835"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Bhatt, Asti</foaf:name>
        <foaf:givenName>Asti</foaf:givenName>
        <foaf:familyName>Bhatt</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>SRI International</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Valentic, Todd</foaf:name>
        <foaf:givenName>Todd</foaf:givenName>
        <foaf:familyName>Valentic</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>SRI International</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Reimer, Ashton</foaf:name>
        <foaf:givenName>Ashton</foaf:givenName>
        <foaf:familyName>Reimer</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>SRI International</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Lamarche, Leslie</foaf:name>
        <foaf:givenName>Leslie</foaf:givenName>
        <foaf:familyName>Lamarche</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>SRI International</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Reyes, Pablo</foaf:name>
        <foaf:givenName>Pablo</foaf:givenName>
        <foaf:familyName>Reyes</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>SRI International</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Cosgrove, Russell</foaf:name>
        <foaf:givenName>Russell</foaf:givenName>
        <foaf:familyName>Cosgrove</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>SRI International</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Case Sudy for "Integrated Geosciences Observatory: A software solution to remove barriers to collaboration and achieve computational reproducibility in geospace sciences"</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2019</dct:issued>
    <dcat:keyword>Ionospheric Physics</dcat:keyword>
    <dcat:keyword>Computational Reproducability</dcat:keyword>
    <dcat:keyword>Space Physics</dcat:keyword>
    <dcat:keyword>Geospace Science</dcat:keyword>
    <dcat:keyword>Aeronomy</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2019-12-05</dct:issued>
    <owl:sameAs rdf:resource="https://zenodo.org/record/3564835"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/3564835</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.3564834"/>
    <owl:versionInfo>v01</owl:versionInfo>
    <dct:description>&lt;p&gt;Resen bucket for producing the case study shown in &amp;quot;Integrated Geosciences Observatory: A software solution to remove barriers to collaboration and achieve computational reproducibility in geospace sciences&amp;quot;, submitted to Journal of Space Weather and Space Climate, December 2019.&amp;nbsp; This can be run by downloading the case_study.tar file and using the import command in Resen.&amp;nbsp; Information about how to use and install resen can be found at https://resen.readthedocs.io/en/latest/.&lt;/p&gt; &lt;p&gt;The following datasets were used in this research:&lt;/p&gt; &lt;p&gt;&lt;strong&gt;MANGO:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Bhatt, A. and Kendell, E. (2015).&amp;nbsp; Data from the MANGO database.&amp;nbsp; Available from https://mangonetwork.org/ (Last accessed 25 November 2019).&lt;/p&gt; &lt;p&gt;&lt;strong&gt;OMNI:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;We acknowledge use of NASA/GSFC&amp;#39;s Space Physics Data Facility&amp;#39;s OMNIWeb (or CDAWeb or ftp) service, and OMNI data.&lt;/p&gt; &lt;p&gt;King, J.H. and N.E. Papitashvili, Solar wind spatial scales in and comparisons of hourly Wind and ACE plasma and magnetic field data, J. Geophys. Res., 110, A02104, 2005.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;SuperMAG:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Gjerloev, J. W. (2012), The SuperMAG data processing technique, J. Geophys. Res., 117, A09213, doi:10.1029/2012JA017683.&lt;/p&gt; &lt;p&gt;Mann, I. R., et al. (2008), The upgraded CARISMA magnetometer array in the THEMIS era, Space Sci. Rev., 141, 413&amp;ndash;451, doi:10.1007/s11214-008-9457-6.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;TEC:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Anthea Coster, MIT/Haystack Observatory. (2015) Data from the CEDAR Madrigal database. Available from https://w3id.org/cedar?experiment_list=experiments3/2015/gps/07nov15&amp;amp;file_list=gps151107g.002.hdf5&lt;/p&gt; &lt;p&gt;&lt;strong&gt;FPI:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Makela J. (2015). Data from the CEDAR Madrigal database, CEDAR Madrigal Database. Available from https://w3id.org/ cedar?experiment_list=experiments/2015/uao/06nov15&amp;amp;file_list= minime05_uao_20151106.cedar.002.hdf5 (Last accessed 25 November 2019).&lt;/p&gt; &lt;p&gt;Makela J. (2015). Data from the CEDAR Madrigal database, CEDAR Madrigal Database. Available from https://w3id.org/ cedar?experiment_list=experiments/2015/ann/06nov15&amp;amp;file_list= minime08_ann_20151106.cedar.003.hdf5 (Last accessed 25 November 2019).&lt;/p&gt; &lt;p&gt;&lt;strong&gt;SuperDARN:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Greenwald, R.A., Baker, K.B., Dudeney, J.R. et al. Space Sci Rev (1995) 71: 761. &lt;a href="https://doi.org/10.1007/BF00751350"&gt;doi:10.1007/BF00751350&lt;/a&gt;&lt;/p&gt; &lt;p&gt;&amp;nbsp;&lt;/p&gt; &lt;p&gt;The following software was used in this project:&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Resen:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Integrated Geoscience Observatory Team. 2019a. Resen. Version 2019.1.0rc2. Available from https://github.com/EarthCubeInGeo/ resen (Last accessed 6 December 2019).&lt;/p&gt; &lt;p&gt;Integrated Geoscience Observatory Team. 2019b. Resen-core. Version 2019.1.0rc2. Available from https://github.com/ EarthCubeInGeo/resen-core (Last accessed 6 December 2019)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;MadrigalWeb:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Rideout W. 2017. MadrigalWeb. Version 3.1.11. Available from https:// pypi.org/project/madrigalWeb/ (Last accessed 6 December 2019).&lt;/p&gt; &lt;p&gt;&lt;strong&gt;numpy:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;St&amp;eacute;fan van der Walt, S. Chris Colbert and Ga&amp;euml;l Varoquaux. The NumPy Array: A Structure for Efficient Numerical Computation, Computing in Science &amp;amp; Engineering, 13, 22-30 (2011), DOI:10.1109/MCSE.2011.37&lt;/p&gt; &lt;p&gt;&lt;strong&gt;matplotlib:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;John D. Hunter. Matplotlib: A 2D Graphics Environment, Computing in Science &amp;amp; Engineering, 9, 90-95 (2007), &lt;a href="https://zenodo.org/record/3264781"&gt;DOI:10.5281/zenodo.3264781&lt;/a&gt;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;h5py:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;A. Collette, Python and HDF5, O&amp;#39;Reilly (2014) (http://shop.oreilly.com/product/0636920030249.do)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;cartopy:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Cartopy. v0.11.2. 22-Aug-2014. Met Office. Exeter, Devon, UK. https://github.com/SciTools/cartopy/archive/v0.11.2.tar.gz&lt;/p&gt; &lt;p&gt;&lt;strong&gt;mangopy:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Lamarche, L. J., Bhatt, A., Reimer, A., and Reyes, P. (2019). mangopy. May 2019.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;pydarn:&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Schmidt, M.T., Detwiller, M.H., Billet, D.D., Bland, E. C., Burrell, A. G., Kotyk, K., Peters, D. GO., Reimer, A. S., Sterne, K. T., and Thomas, E. G. (2020). pyDARN, v1.0.0, January 2020.&lt;/p&gt; &lt;p&gt;&amp;nbsp;&lt;/p&gt;</dct:description>
    <dct:description>This work was supported by the US National Science Foundation grants ICER-1541057 and CSSI-1835573 to SRI International.</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.3564835"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.3564835</dcat:accessURL>
        <dcat:byteSize>3065282560</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/3564835/files/case_study.tar</dcat:downloadURL>
        <dcat:mediaType>application/x-tar</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>

views

downloads

See more details...

	All versions	This version
Views	71	71
Downloads	11	11
Data volume	33.7 GB	33.7 GB
Unique views	64	64
Unique downloads	9	9

More info on how stats are collected.

Indexed in

Publication date:

December 5, 2019

DOI:

Keyword(s):

Ionospheric Physics Computational Reproducability Space Physics Geospace Science Aeronomy

License (for files):

Creative Commons Attribution 4.0 International

Versions

Version v01 10.5281/zenodo.3564835

Dec 5, 2019

Cite all versions? You can cite all versions by using the DOI 10.5281/zenodo.3564834. This DOI represents all versions, and will always resolve to the latest one. Read more.

Case Sudy for "Integrated Geosciences Observatory: A software solution to remove barriers to collaboration and achieve computational reproducibility in geospace sciences"

DCAT Export

Versions

Share

Cite as

Export

About

Blog

Help

Developers

Contribute

Case Sudy for "Integrated Geosciences Observatory: A software solution to remove barriers to collaboration and achieve computational reproducibility in geospace sciences"

DCAT Export

Zenodo DOI Badge

DOI

10.5281/zenodo.3564835

Markdown

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3564835.svg)](https://doi.org/10.5281/zenodo.3564835)

reStructedText

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3564835.svg :target: https://doi.org/10.5281/zenodo.3564835

HTML

<a href="https://doi.org/10.5281/zenodo.3564835"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.3564835.svg" alt="DOI"></a>

Image URL

https://zenodo.org/badge/DOI/10.5281/zenodo.3564835.svg

Target URL

https://doi.org/10.5281/zenodo.3564835

Versions

Share

Cite as

Export