There is a newer version of this record available.

Software Open Access

NNGT 2.5.0: sparse clustered graphs and improved backend support

Tanguy Fardet


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <datafield tag="041" ind1=" " ind2=" ">
    <subfield code="a">eng</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">nngt</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">neuron</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">network</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">graph</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">topology</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">python</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">nest</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">graph-tool</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">networkx</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">igraph</subfield>
  </datafield>
  <controlfield tag="005">20211015130926.0</controlfield>
  <controlfield tag="001">3552708</controlfield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">1302724</subfield>
    <subfield code="z">md5:0431ac5746edd4e7cc98ba78da1c1e51</subfield>
    <subfield code="u">https://zenodo.org/record/3552708/files/nngt-2.5.0.zip</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2021-08-18</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">software</subfield>
    <subfield code="o">oai:zenodo.org:3552708</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="a">Tanguy Fardet</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">NNGT 2.5.0: sparse clustered graphs and improved backend support</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">https://opensource.org/licenses/GPL-3.0</subfield>
    <subfield code="a">GNU General Public License v3.0 only</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;This new version adds support for NetworkX 2.6+, introduces a new network model, improves IO and plotting modules, and extends the list of functions that are supported by the default backend (if networkx, igraph, and graph-tool are not installed on the system).&lt;/p&gt;

&lt;p&gt;&lt;strong&gt;New features&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;sparse_clustered: it is now possible to generate sparse graphs with a desired clustering coefficient, this comes with an associated rewiring scheme (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/f45d0a9b8c895066bb59b2d1ee150b452fb7cfd5"&gt;f45d0a9b&lt;/a&gt;)&lt;/li&gt;
	&lt;li&gt;support for GraphML file format (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/a9f8710da727dd51fdc01a31e7b8a2dc7d13188a"&gt;a9f8710d&lt;/a&gt;)&lt;/li&gt;
	&lt;li&gt;support NetworkX 2.6+ (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/f4e5002ec6f409eb8f2b1af4f70ba8e49877650c"&gt;f4e5002e&lt;/a&gt;)&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&lt;strong&gt;Enhancements&lt;/strong&gt;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;More efficient edge attribute access (speed and memory improvements, &lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/c8f29951207274ba830d490e0ebc1361540a5eec"&gt;c8f29951&lt;/a&gt;)&lt;/li&gt;
	&lt;li&gt;Improved plots (color and size support for nodes and edges, visible arrows for directed networks..., &lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/7f5340b8dbd20789d47a8e6a58a80a3cf026a921"&gt;7f5340b8&lt;/a&gt; &amp;amp; &lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/ccdd627f240b43e32ffe8cbce409186fddfc4865"&gt;ccdd627f&lt;/a&gt;)&lt;/li&gt;
	&lt;li&gt;Add connectedness test with nngt default backend (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/d3979a1526793df2419368675f3f21a1e7556938"&gt;d3979a15&lt;/a&gt;)&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&lt;strong&gt;Bugfixes&lt;/strong&gt;&lt;/p&gt;

&lt;p&gt;Correct delete_edges for nngt backend that did not update the node degrees (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/b1ca08dfa968978a022026c413382b287bf723aa"&gt;b1ca08df&lt;/a&gt;).&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">url</subfield>
    <subfield code="i">isDerivedFrom</subfield>
    <subfield code="a">https://git.sr.ht/~tfardet/NNGT</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">url</subfield>
    <subfield code="i">isReferencedBy</subfield>
    <subfield code="a">https://nngt.readthedocs.io/en/latest</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.3402493</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.3552708</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">software</subfield>
  </datafield>
</record>
462
49
views
downloads
All versions This version
Views 46212
Downloads 492
Data volume 68.4 MB2.6 MB
Unique views 38912
Unique downloads 252

Share

Cite as