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NNGT 2.5.0: sparse clustered graphs and improved backend support

Tanguy Fardet


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    <dct:title>NNGT 2.5.0: sparse clustered graphs and improved backend support</dct:title>
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    <dcat:keyword>topology</dcat:keyword>
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    <dcat:keyword>nest</dcat:keyword>
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    <dcat:keyword>networkx</dcat:keyword>
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    <dct:description>&lt;p&gt;This new version adds support for NetworkX 2.6+, introduces a new network model, improves IO and plotting modules, and extends the list of functions that are supported by the default backend (if networkx, igraph, and graph-tool are not installed on the system).&lt;/p&gt; &lt;p&gt;&lt;strong&gt;New features&lt;/strong&gt;&lt;/p&gt; &lt;ul&gt; &lt;li&gt;sparse_clustered: it is now possible to generate sparse graphs with a desired clustering coefficient, this comes with an associated rewiring scheme (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/f45d0a9b8c895066bb59b2d1ee150b452fb7cfd5"&gt;f45d0a9b&lt;/a&gt;)&lt;/li&gt; &lt;li&gt;support for GraphML file format (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/a9f8710da727dd51fdc01a31e7b8a2dc7d13188a"&gt;a9f8710d&lt;/a&gt;)&lt;/li&gt; &lt;li&gt;support NetworkX 2.6+ (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/f4e5002ec6f409eb8f2b1af4f70ba8e49877650c"&gt;f4e5002e&lt;/a&gt;)&lt;/li&gt; &lt;/ul&gt; &lt;p&gt;&lt;strong&gt;Enhancements&lt;/strong&gt;&lt;/p&gt; &lt;ul&gt; &lt;li&gt;More efficient edge attribute access (speed and memory improvements, &lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/c8f29951207274ba830d490e0ebc1361540a5eec"&gt;c8f29951&lt;/a&gt;)&lt;/li&gt; &lt;li&gt;Improved plots (color and size support for nodes and edges, visible arrows for directed networks..., &lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/7f5340b8dbd20789d47a8e6a58a80a3cf026a921"&gt;7f5340b8&lt;/a&gt; &amp;amp; &lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/ccdd627f240b43e32ffe8cbce409186fddfc4865"&gt;ccdd627f&lt;/a&gt;)&lt;/li&gt; &lt;li&gt;Add connectedness test with nngt default backend (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/d3979a1526793df2419368675f3f21a1e7556938"&gt;d3979a15&lt;/a&gt;)&lt;/li&gt; &lt;/ul&gt; &lt;p&gt;&lt;strong&gt;Bugfixes&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;Correct delete_edges for nngt backend that did not update the node degrees (&lt;a href="https://git.sr.ht/~tfardet/NNGT/commit/b1ca08dfa968978a022026c413382b287bf723aa"&gt;b1ca08df&lt;/a&gt;).&lt;/p&gt;</dct:description>
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