RNeXML-v2.4.0.zip
ropensci-RNeXML-1a6ff35
.Rbuildignore
317 Bytes
.circleci
config.yml
322 Bytes
.gitignore
271 Bytes
.travis.yml
553 Bytes
CONTRIBUTING.md
4.8 kB
DESCRIPTION
2.6 kB
LICENSE
80 Bytes
NAMESPACE
2.5 kB
NEWS.md
5.0 kB
R
S4-utils.R
9.3 kB
add_basic_meta.R
4.6 kB
add_characters.R
9.1 kB
add_meta.R
2.9 kB
add_namespaces.R
2.3 kB
add_trees.R
4.1 kB
character_classes.R
16.4 kB
classes.R
26.6 kB
concatenate_nexml.R
1.9 kB
constructors.R
3.0 kB
deprecated.R
5.0 kB
get_basic_metadata.R
1.7 kB
get_characters.R
8.2 kB
get_level.R
5.3 kB
get_metadata.R
6.8 kB
get_namespaces.R
479 Bytes
get_rdf.R
945 Bytes
get_taxa.R
1.1 kB
get_taxa_meta.R
1.9 kB
get_trees.R
8.3 kB
internal_get_node_maps.R
1.5 kB
internal_isEmpty.R
636 Bytes
internal_name_by_id.R
324 Bytes
internal_nexml_id.R
872 Bytes
meta.R
8.5 kB
nexmlTree.R
2.4 kB
nexml_add.R
1.2 kB
nexml_get.R
3.2 kB
nexml_methods.R
10.4 kB
nexml_publish.R
4.4 kB
nexml_read.R
1.9 kB
nexml_validate.R
2.2 kB
nexml_write.R
3.8 kB
prefixed-uris.R
3.1 kB
simmap.R
6.6 kB
taxize_nexml.R
1.9 kB
tbl_df.R
44 Bytes
utils.R
1.7 kB
README.Rmd
3.8 kB
README.md
3.6 kB
RNeXML.Rproj
343 Bytes
_pkgdown.yml
0 Bytes
appveyor.yml
1.0 kB
codecov.yml
208 Bytes
codemeta.json
13.1 kB
cran-comments.md
500 Bytes
docs
apple-touch-icon-120x120.png
10.1 kB
apple-touch-icon-152x152.png
13.3 kB
apple-touch-icon-180x180.png
16.0 kB
apple-touch-icon-60x60.png
4.2 kB
apple-touch-icon-76x76.png
5.6 kB
apple-touch-icon.png
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favicon-16x16.png
1.2 kB
favicon-32x32.png
2.0 kB
favicon.ico
15.1 kB
link.svg
810 Bytes
logo.svg
68.9 kB
inst
CITATION
581 Bytes
WORDLIST
621 Bytes
examples
RDFa2RDFXML.xsl
32.1 kB
biophylo.xml
1.1 kB
characters.xml
23.9 kB
coal.xml
2.1 kB
comp_analysis.xml
6.1 kB
gardiner_1984.xml
2.9 kB
geospiza.xml
6.9 kB
jsonld-ex.R
717 Bytes
mbank_X962_11-22-2013_1534.nex
21.2 kB
merge_data.Rmd
1.8 kB
merge_data.md
7.4 kB
meta_example.xml
6.5 kB
meta_taxa.xml
2.1 kB
missing_some_branchlengths.xml
60.3 kB
multitrees.xml
6.6 kB
ncbii.xml
8.4 kB
no-base-ns.xml
730 Bytes
ontotrace-result.xml
7.4 kB
phenex.xml
18.4 kB
phenoscape.xml
2.0 kB
primates.xml
196.3 kB
primates_from_R.xml
185.6 kB
primates_meta.xml
86.4 kB
primates_meta_xslt.xml
190.7 kB
simmap.nex
5.1 kB
simmap.xml
10.7 kB
simmap_ex.xml
62.0 kB
some_missing_branchlengths.xml
5.3 kB
sparql.newick
5.1 kB
taxa.xml
3.2 kB
treebase-record.xml
184.4 kB
trees.xml
5.3 kB
simmap.md
1.8 kB
man
Annotated-class.Rd
480 Bytes
New.Rd
1.1 kB
add_basic_meta.Rd
2.9 kB
add_characters.Rd
1.1 kB
add_meta.Rd
2.0 kB
add_namespaces.Rd
2.0 kB
add_trees.Rd
746 Bytes
c-meta.Rd
1.2 kB
c-nexml-method.Rd
892 Bytes
charzero_as_empty.Rd
598 Bytes
coalesce_.Rd
591 Bytes
constructors.Rd
1.4 kB
dot-cacheNextMethod.Rd
1.2 kB
dot-callGeneric.Rd
1.4 kB
dot-methodWithNext.Rd
1.2 kB
dot-sigLabel.Rd
697 Bytes
expand_prefix.Rd
2.0 kB
figures
logo.svg
68.9 kB
findNextMethod.Rd
2.2 kB
flatten_multiphylo.Rd
759 Bytes
get_all_meta.Rd
654 Bytes
get_characters.Rd
2.7 kB
get_characters_list.Rd
724 Bytes
get_citation.Rd
831 Bytes
get_flat_trees.Rd
940 Bytes
get_level.Rd
2.0 kB
get_license.Rd
825 Bytes
get_meta.Rd
1.1 kB
get_metadata.Rd
1.8 kB
get_metadata_values.Rd
1.0 kB
get_namespaces.Rd
590 Bytes
get_rdf.Rd
515 Bytes
get_taxa.Rd
534 Bytes
get_taxa_list.Rd
420 Bytes
get_taxa_meta.Rd
765 Bytes
get_taxa_meta_list.Rd
804 Bytes
get_trees.Rd
855 Bytes
get_trees_list.Rd
1.0 kB
lcapply.Rd
424 Bytes
meta.Rd
1.5 kB
nexml-class.Rd
1.9 kB
nexml_add.Rd
933 Bytes
nexml_figshare.Rd
1.4 kB
nexml_get.Rd
2.5 kB
nexml_publish.Rd
704 Bytes
nexml_read.Rd
1.2 kB
nexml_validate.Rd
850 Bytes
nexml_write.Rd
2.3 kB
reset_id_counter.Rd
238 Bytes
simmap_to_nexml.Rd
1.1 kB
slot-ResourceMeta-method.Rd
916 Bytes
summary-nexml-method.Rd
2.3 kB
taxize_nexml.Rd
775 Bytes
toPhylo.Rd
529 Bytes
manuscripts
.gitignore
23 Bytes
Dockerfile
570 Bytes
LICENSE
17.1 kB
Makefile
71 Bytes
README.md
3.6 kB
components
comp_analysis.xml
6.1 kB
elsarticle.cls
22.2 kB
elsarticle.latex
5.1 kB
methods-in-ecology-and-evolution.csl
6.9 kB
references.bib
17.4 kB
restore-cache.R
227 Bytes
sup-references.bib
3.0 kB
trees.xml
5.3 kB
manuscript.Rmd
30.1 kB
manuscript.pdf
340.3 kB
manuscript.tex
45.7 kB
public-domain-versions.txt
1.0 kB
pkgdown
favicon
apple-touch-icon-120x120.png
10.1 kB
apple-touch-icon-152x152.png
13.3 kB
apple-touch-icon-180x180.png
16.0 kB
apple-touch-icon-60x60.png
4.2 kB
apple-touch-icon-76x76.png
5.6 kB
apple-touch-icon.png
16.0 kB
favicon-16x16.png
1.2 kB
favicon-32x32.png
2.0 kB
favicon.ico
15.1 kB
tests
spelling.R
130 Bytes
test-all.R
93 Bytes
testthat
conversions.R
6.1 kB
geiger_test.R
1.9 kB
helper-RNeXML.R
206 Bytes
test_01_exported_util.R
1.9 kB
test_01_utils.R
7.8 kB
test_02_summary.R
2.2 kB
test_ape.R
3.3 kB
test_characters.R
3.9 kB
test_comp_analysis.R
947 Bytes
test_concatenate.R
4.5 kB
test_get_characters.R
1.4 kB
test_get_level.R
144 Bytes
test_global_ids.R
424 Bytes
test_inheritance.R
3.9 kB
test_meta.R
9.2 kB
test_meta_extract.R
12.0 kB
test_nexml_read.R
1.2 kB
test_parsing.R
3.0 kB
test_publish.R
2.2 kB
test_rdf.R
1.8 kB
test_serializing.R
2.6 kB
test_simmap.R
1.0 kB
test_taxonomy.R
2.2 kB
test_toplevel_api.R
2.1 kB
test_validate.R
682 Bytes
test_zzz_cleanup.R
79 Bytes
treebase_test.R
1.3 kB
tools
README-unnamed-chunk-5-1.png
60.9 kB
vignettes
S4.Rmd
4.1 kB
intro.Rmd
5.6 kB
metadata.Rmd
7.5 kB
references.bib
12.1 kB
simmap.Rmd
7.0 kB
sparql.Rmd
6.1 kB