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TreeDist-0.0.0.9000.zip

ms609-TreeDist-417394b
- .Rbuildignore 339 Bytes
- .covrignore 7 Bytes
- .gitattributes 378 Bytes
- .gitignore 224 Bytes
- .travis.yml 2.0 kB
- .zenodo.json 520 Bytes
- CODE_OF_CONDUCT.md 1.4 kB
- CONTRIBUTING.md 2.2 kB
- DESCRIPTION 1.9 kB
- NAMESPACE 2.3 kB
- NEWS.md 150 Bytes
- R
  - Information.R 14.5 kB
  - RcppExports.R 925 Bytes
  - TreeDist-package.R 208 Bytes
  - data.R 381 Bytes
  - plot.R 8.8 kB
  - sysdata.rda 853.1 kB
  - tree_distance.R 3.2 kB
  - tree_distance_info.R 10.9 kB
  - tree_distance_kendall-colijn.R 3.3 kB
  - tree_distance_mmsi.R 1.9 kB
  - tree_distance_msd.R 1.8 kB
  - tree_distance_nye.R 7.2 kB
  - tree_distance_rf.R 4.5 kB
  - tree_distance_utilities.R 4.7 kB
  - tree_information.R 3.0 kB
  - zzz.R 1.0 kB
- README.md 6.4 kB
- _config.yml 27 Bytes
- codemeta.json 9.4 kB
- cran-comments.md 340 Bytes
- data-raw
  - oneOverlap.R 661 Bytes
- inst
  - CITATION 1.4 kB
  - REFERENCES.bib 8.3 kB
  - _pkgdown.yml 2.4 kB
  - apa-old-doi-prefix.csl 25.1 kB
  - preamble.tex 127 Bytes
- man
  - AllSplitPairings.Rd 1.0 kB
  - CalculateTreeDistance.Rd 880 Bytes
  - ClusteringInfo.Rd 1.7 kB
  - Entropy.Rd 578 Bytes
  - GeneralizedRF.Rd 2.3 kB
  - JaccardRobinsonFoulds.Rd 4.5 kB
  - JointInformation.Rd 1.7 kB
  - KendallColijn.Rd 1.9 kB
  - MatchingSplitDistance.Rd 2.8 kB
  - MeilaVariationOfInformation.Rd 2.1 kB
  - NormalizeInfo.Rd 1.1 kB
  - NyeTreeSimilarity.Rd 4.4 kB
  - PartitionInfo.Rd 649 Bytes
  - ReportMatching.Rd 584 Bytes
  - RobinsonFouldsInfo.Rd 4.5 kB
  - SplitEntropy.Rd 1.2 kB
  - SplitMutualInformation.Rd 3.0 kB
  - SplitsCompatible.Rd 699 Bytes
  - TreeDist-package.Rd 1.3 kB
  - TreeDistPlot.Rd 1.0 kB
  - TreeDistance.Rd 8.8 kB
  - VisualizeMatching.Rd 1.7 kB
- man-roxygen
  - split12Params.R 213 Bytes
  - splits12params.R 361 Bytes
  - splitsParam.R 297 Bytes
  - tree12Params.R 136 Bytes
- src
  - RcppExports.cpp 5.5 kB
  - SplitList.cpp 1.1 kB
  - SplitList.h 182 Bytes
  - gnrl.h 492 Bytes
  - lap.cpp 10.1 kB
  - lap.h 800 Bytes
  - tree_distances.cpp 22.5 kB
  - tree_distances.h 859 Bytes
- tests
  - figs
    - deps.txt 67 Bytes
    - plot-r
      - collapse-a-node.svg 37.3 kB
      - collapse-and-change.svg 36.4 kB
      - rf-example.svg 37.3 kB
      - test-lc-letters.svg 8.0 kB
      - test-uc-letters.svg 8.0 kB
      - test-vm.svg 26.6 kB
      - test-vmr.svg 24.3 kB
      - test-with-space.svg 8.0 kB
      - test-without-space.svg 8.0 kB
      - vm-matchzeros-false.svg 22.8 kB
      - vm-single-splits.svg 18.5 kB
  - testthat
    - test-information.R 4.3 kB
    - test-plot.R 4.9 kB
    - test-tree_distance.R 23.3 kB
    - test-tree_distance_utilities.R 5.2 kB
    - test-tree_numbering.R 431 Bytes
  - testthat.R 60 Bytes
- vignettes
  - Against-matching-split-info.Rmd.old 6.8 kB
  - Generalized-RF.Rmd 10.5 kB
  - Robinson-Foulds.Rmd 14.1 kB
  - Tree-distance-metric-evaluation.Rmd 6.0 kB
  - Using-TreeDist.Rmd 4.1 kB
  - information.Rmd 7.5 kB
  - tree-distances.Rmd 3.8 kB
  - using-distances.Rmd 14.1 kB