Dataset Open Access

Raw data of "Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1"

Gaullier, Guillaume; Roberts, Genevieve; Muthurajan, Uma M.; Bowerman, Samuel; Rudolph, Johannes; Mahadevan, Jyothi; Jha, Asmita; Rae, Purushka S.; Luger, Karolin


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.3519436">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.3519436</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.3519436"/>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-3405-6021">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-3405-6021</dct:identifier>
        <foaf:name>Gaullier, Guillaume</foaf:name>
        <foaf:givenName>Guillaume</foaf:givenName>
        <foaf:familyName>Gaullier</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Roberts, Genevieve</foaf:name>
        <foaf:givenName>Genevieve</foaf:givenName>
        <foaf:familyName>Roberts</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-2596-5848">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-2596-5848</dct:identifier>
        <foaf:name>Muthurajan, Uma M.</foaf:name>
        <foaf:givenName>Uma M.</foaf:givenName>
        <foaf:familyName>Muthurajan</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-0753-4294">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-0753-4294</dct:identifier>
        <foaf:name>Bowerman, Samuel</foaf:name>
        <foaf:givenName>Samuel</foaf:givenName>
        <foaf:familyName>Bowerman</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-0230-3323">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-0230-3323</dct:identifier>
        <foaf:name>Rudolph, Johannes</foaf:name>
        <foaf:givenName>Johannes</foaf:givenName>
        <foaf:familyName>Rudolph</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-4776-840X">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-4776-840X</dct:identifier>
        <foaf:name>Mahadevan, Jyothi</foaf:name>
        <foaf:givenName>Jyothi</foaf:givenName>
        <foaf:familyName>Mahadevan</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-2612-551X">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-2612-551X</dct:identifier>
        <foaf:name>Jha, Asmita</foaf:name>
        <foaf:givenName>Asmita</foaf:givenName>
        <foaf:familyName>Jha</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Rae, Purushka S.</foaf:name>
        <foaf:givenName>Purushka S.</foaf:givenName>
        <foaf:familyName>Rae</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0001-5136-5331">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0001-5136-5331</dct:identifier>
        <foaf:name>Luger, Karolin</foaf:name>
        <foaf:givenName>Karolin</foaf:givenName>
        <foaf:familyName>Luger</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Biochemistry, University of Colorado Boulder, Boulder, CO, USA</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Raw data of "Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1"</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2019</dct:issued>
    <dcat:keyword>biochemistry</dcat:keyword>
    <dcat:keyword>binding curve</dcat:keyword>
    <dcat:keyword>fluorescence polarization</dcat:keyword>
    <dcat:keyword>FRET</dcat:keyword>
    <dcat:keyword>SEC-MALS</dcat:keyword>
    <dcat:keyword>SDS-PAGE</dcat:keyword>
    <dcat:keyword>Native PAGE</dcat:keyword>
    <dcat:keyword>Size Exclusion Chromatography</dcat:keyword>
    <dcat:keyword>Differential scanning fluorimetry</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2019-11-18</dct:issued>
    <dct:language rdf:resource="http://publications.europa.eu/resource/authority/language/ENG"/>
    <owl:sameAs rdf:resource="https://zenodo.org/record/3519436"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/3519436</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <dct:relation rdf:resource="https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-20864"/>
    <dct:relation rdf:resource="https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10336/"/>
    <dct:relation rdf:resource="https://www.ebi.ac.uk/pdbe/entry/pdb/6usj"/>
    <dct:relation rdf:resource="https://doi.org/10.1101/846618"/>
    <dct:isVersionOf rdf:resource="https://doi.org/10.5281/zenodo.3519435"/>
    <owl:versionInfo>1.0</owl:versionInfo>
    <dct:description>&lt;p&gt;Raw data used in the following article:&lt;/p&gt; &lt;p&gt;Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1&lt;/p&gt; &lt;p&gt;Guillaume Gaullier, Genevieve Roberts, Uma M. Muthurajan, Samuel Bowerman, Johannes Rudolph, Jyothi Mahadevan, Asmita Jha, Purushka S. Rae, Karolin Luger&lt;/p&gt; &lt;p&gt;bioRxiv 846618; doi: &lt;a href="https://doi.org/10.1101/846618"&gt;https://doi.org/10.1101/846618&lt;/a&gt;&lt;/p&gt; &lt;p&gt;This includes:&lt;/p&gt; &lt;ul&gt; &lt;li&gt;uncropped and unaltered images of all SDS-PAGE and native PAGE&lt;/li&gt; &lt;li&gt;all size exclusion chromatograms and light scattering data&lt;/li&gt; &lt;li&gt;raw data of all fluorescence polarization and FRET binding curves&lt;/li&gt; &lt;li&gt;thermal shif assay raw data&lt;/li&gt; &lt;/ul&gt;</dct:description>
    <dct:description>This work was funded by the Howard Hughes Medical Institute and the US National Institutes of Health (NIH) National Cancer Institute (NCI) R01 CA218255.</dct:description>
    <dct:description>{"references": ["Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1 Guillaume Gaullier, Genevieve Roberts, Uma M. Muthurajan, Samuel Bowerman, Johannes Rudolph, Jyothi Mahadevan, Asmita Jha, Purushka S. Rae, Karolin Luger bioRxiv 846618; doi: https://doi.org/10.1101/846618"]}</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.3519436"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.3519436</dcat:accessURL>
        <dcat:byteSize>57820255</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/3519436/files/all-gels-uncropped.zip</dcat:downloadURL>
        <dcat:mediaType>application/zip</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.3519436</dcat:accessURL>
        <dcat:byteSize>11286254</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/3519436/files/analytical-SEC.zip</dcat:downloadURL>
        <dcat:mediaType>application/zip</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.3519436</dcat:accessURL>
        <dcat:byteSize>97829</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/3519436/files/DSF-melting-curves.zip</dcat:downloadURL>
        <dcat:mediaType>application/zip</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.3519436</dcat:accessURL>
        <dcat:byteSize>155874</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/3519436/files/FP-binding-curves.zip</dcat:downloadURL>
        <dcat:mediaType>application/zip</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.3519436</dcat:accessURL>
        <dcat:byteSize>607130</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/3519436/files/FRET-binding-curves.zip</dcat:downloadURL>
        <dcat:mediaType>application/zip</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL>https://doi.org/10.5281/zenodo.3519436</dcat:accessURL>
        <dcat:byteSize>101900254</dcat:byteSize>
        <dcat:downloadURL>https://zenodo.org/record/3519436/files/SEC-MALS.zip</dcat:downloadURL>
        <dcat:mediaType>application/zip</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
61
7
views
downloads
All versions This version
Views 6161
Downloads 77
Data volume 116.9 MB116.9 MB
Unique views 5252
Unique downloads 55

Share

Cite as