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althonos/pronto: 1.1.0

Martin Larralde; tatsu


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  <identifier identifierType="DOI">10.5281/zenodo.3518326</identifier>
  <creators>
    <creator>
      <creatorName>Martin Larralde</creatorName>
      <affiliation>EMBL</affiliation>
    </creator>
    <creator>
      <creatorName>tatsu</creatorName>
    </creator>
  </creators>
  <titles>
    <title>althonos/pronto: 1.1.0</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <dates>
    <date dateType="Issued">2019-10-24</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3518326</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/althonos/pronto/tree/v1.1.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.595572</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.1.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">Added
&lt;ul&gt;
&lt;li&gt;&lt;code&gt;Entity.add_synonym&lt;/code&gt; method to create a new synonym and add it to an entity.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;@roundrepr&lt;/code&gt; now adds a minimal docstring to the generated &lt;code&gt;__repr__&lt;/code&gt; method.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;Ontology&lt;/code&gt; caches subclassing relationships to greatly improve performance of
&lt;code&gt;Term.subclasses&lt;/code&gt;.
### Changed&lt;/li&gt;
&lt;li&gt;&lt;code&gt;Entity&lt;/code&gt; subclasses now store their &lt;code&gt;id&lt;/code&gt; directly to improve performance.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;Term.subclasses&lt;/code&gt; and &lt;code&gt;Term.superclasses&lt;/code&gt; use &lt;code&gt;collections.deque&lt;/code&gt; instead of
&lt;code&gt;queue.Queue&lt;/code&gt; as a LIFO structure since thread-safety is not needed.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;chardet&lt;/code&gt; result is now used even when prediction confidence is under 100%
to detect encoding of the handle passed to &lt;code&gt;Ontology&lt;/code&gt;. 
### Fixed&lt;/li&gt;
&lt;li&gt;&lt;code&gt;SynonymType&lt;/code&gt; comparison implementation.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;Synonym.type&lt;/code&gt; getter crashing on &lt;code&gt;type&lt;/code&gt; not being &lt;code&gt;None&lt;/code&gt;.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;RdfXMLParser&lt;/code&gt; crashing on synonymtypedefs without scope specifiers.&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>
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