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JXing-Lab/nanopore-sv-evaluation: Code and data

Xing Lab of Genomics


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    <subfield code="a">&lt;p&gt;This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".&lt;/p&gt;
&lt;p&gt;nanopore-pipeline.sif is a container includes all nanopore pipelines and random forest classifier.
For details, see &lt;a href="https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md"&gt;https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;CallSets.zip included all the SV called by the 7 pipelines.&lt;/p&gt;
&lt;p&gt;Simulation_Chr20 includes the modified GRCh38 Chr20 genome with artificial SV insertions and deletions, the simulated true sets, and the training profile for NanoSim read simulation.&lt;/p&gt;</subfield>
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