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JXing-Lab/nanopore-sv-evaluation: Code and data

Xing Lab of Genomics


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Xing Lab of Genomics</dc:creator>
  <dc:date>2019-10-04</dc:date>
  <dc:description>This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".
nanopore-pipeline.sif is a container includes all nanopore pipelines and random forest classifier.
For details, see https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md
CallSets.zip included all the SV called by the 7 pipelines.
Simulation_Chr20 includes the modified GRCh38 Chr20 genome with artificial SV insertions and deletions, the simulated true sets, and the training profile for NanoSim read simulation.</dc:description>
  <dc:identifier>https://zenodo.org/record/3473501</dc:identifier>
  <dc:identifier>10.5281/zenodo.3473501</dc:identifier>
  <dc:identifier>oai:zenodo.org:3473501</dc:identifier>
  <dc:relation>url:https://github.com/JXing-Lab/nanopore-sv-evaluation/tree/1.0</dc:relation>
  <dc:relation>doi:10.5281/zenodo.3473500</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>JXing-Lab/nanopore-sv-evaluation: Code and data</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
</oai_dc:dc>
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