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JXing-Lab/nanopore-sv-evaluation: Code and data

Xing Lab of Genomics


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  <identifier identifierType="DOI">10.5281/zenodo.3473501</identifier>
  <creators>
    <creator>
      <creatorName>Xing Lab of Genomics</creatorName>
      <affiliation>Rutgers, The State University of New Jersey</affiliation>
    </creator>
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  <titles>
    <title>JXing-Lab/nanopore-sv-evaluation: Code and data</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <dates>
    <date dateType="Issued">2019-10-04</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3473501</alternateIdentifier>
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  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/JXing-Lab/nanopore-sv-evaluation/tree/1.0</relatedIdentifier>
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  <version>1.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".&lt;/p&gt;
&lt;p&gt;nanopore-pipeline.sif is a container includes all nanopore pipelines and random forest classifier.
For details, see &lt;a href="https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md"&gt;https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md&lt;/a&gt;&lt;/p&gt;
&lt;p&gt;CallSets.zip included all the SV called by the 7 pipelines.&lt;/p&gt;
&lt;p&gt;Simulation_Chr20 includes the modified GRCh38 Chr20 genome with artificial SV insertions and deletions, the simulated true sets, and the training profile for NanoSim read simulation.&lt;/p&gt;</description>
  </descriptions>
</resource>
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