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JXing-Lab/nanopore-sv-evaluation: Code and data

Xing Lab of Genomics

This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".

nanopore-pipeline.sif is a container includes all nanopore pipelines and random forest classifier. For details, see https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md

CallSets.zip included all the SV called by the 7 pipelines.

Simulation_Chr20 includes the modified GRCh38 Chr20 genome with artificial SV insertions and deletions, the simulated true sets, and the training profile for NanoSim read simulation.

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