Software Open Access
Xing Lab of Genomics
This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".
nanopore-pipeline.sif is a container includes all nanopore pipelines and random forest classifier. For details, see https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md
CallSets.zip included all the SV called by the 7 pipelines.
Simulation_Chr20 includes the modified GRCh38 Chr20 genome with artificial SV insertions and deletions, the simulated true sets, and the training profile for NanoSim read simulation.