Software Open Access

JXing-Lab/nanopore-sv-evaluation: Code and data

Xing Lab of Genomics

This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".

nanopore-pipeline.sif is a container includes all nanopore pipelines and random forest classifier. For details, see https://github.com/JXing-Lab/nanopore-sv-evaluation/blob/master/singularity/readme.md

CallSets.zip included all the SV called by the 7 pipelines.

Simulation_Chr20 includes the modified GRCh38 Chr20 genome with artificial SV insertions and deletions, the simulated true sets, and the training profile for NanoSim read simulation.

Files (9.3 kB)
Name Size
JXing-Lab/nanopore-sv-evaluation-1.0.zip
md5:3eb3c9897c5f3dd73e93b98dac63854d
9.3 kB Download
218
9
views
downloads
All versions This version
Views 218218
Downloads 99
Data volume 84.0 kB84.0 kB
Unique views 209209
Unique downloads 99

Share

Cite as