Journal article Open Access

DSDB: Reproducible Computational Modeling

Jackson Brown; Nicholas Weber


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  <identifier identifierType="DOI">10.5281/zenodo.3445531</identifier>
  <creators>
    <creator>
      <creatorName>Jackson Brown</creatorName>
      <affiliation>Allen Institute for Cell Science</affiliation>
    </creator>
    <creator>
      <creatorName>Nicholas Weber</creatorName>
      <affiliation>University of Washington</affiliation>
    </creator>
  </creators>
  <titles>
    <title>DSDB: Reproducible Computational Modeling</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <subjects>
    <subject>collaborative research</subject>
    <subject>reproducible research</subject>
    <subject>data storage</subject>
    <subject>data provenance</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2019-07-16</date>
  </dates>
  <resourceType resourceTypeGeneral="Text">Journal article</resourceType>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3445531</alternateIdentifier>
  </alternateIdentifiers>
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    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3337374</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/ro</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;In the following abstract we describe Dataset-Database (DSDB), an open-source system for handling the provenance, versioning, de-duplication, history, and query of dynamic databases used at the Allen Institute for Cell Science. We present our initial design and deployment of DSDB, the results of this work for computational modeling, and conclude with a discussion of the future work necessary for provisioning data discovery and sharing tools that facilitate transparent reproducible research through provenance aware features.&lt;/p&gt;</description>
  </descriptions>
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