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venelin/PCMBase: Improved APIs and docs

Venelin Mitov; Georgios Asimomitis; krzbar

This package release is compatible with a major revision of the manuscript:

Mitov, V., Bartoszek, K., Asimomitis, G., & Stadler, T. Fast Likelihood Calculation for Multivariate Gaussian Phylogenetic Models with Shifts. In review.

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