Dataset Open Access

Data and code for 'Connectivity over a disease gradient enables recovery of rainforest frogs'

Bell, Sara C.; Heard, Geoffrey W.; Berger, Lee; Skerratt, Lee F.


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  <identifier identifierType="DOI">10.5281/zenodo.3402153</identifier>
  <creators>
    <creator>
      <creatorName>Bell, Sara C.</creatorName>
      <givenName>Sara C.</givenName>
      <familyName>Bell</familyName>
      <affiliation>College of Public Health, Medical and Veterinary Sciences, James Cook University, Townsville, Queensland 4811, Australia</affiliation>
    </creator>
    <creator>
      <creatorName>Heard, Geoffrey W.</creatorName>
      <givenName>Geoffrey W.</givenName>
      <familyName>Heard</familyName>
      <affiliation>Institute of Land, Water and Society, Charles Sturt University, Albury, New South Wales 2640, Australia</affiliation>
    </creator>
    <creator>
      <creatorName>Berger, Lee</creatorName>
      <givenName>Lee</givenName>
      <familyName>Berger</familyName>
      <affiliation>One Health Research Group, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Werribee, Victoria 3030, Australia</affiliation>
    </creator>
    <creator>
      <creatorName>Skerratt, Lee F.</creatorName>
      <givenName>Lee F.</givenName>
      <familyName>Skerratt</familyName>
      <affiliation>One Health Research Group, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Werribee, Victoria 3030, Australia</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Data and code for 'Connectivity over a disease gradient enables recovery of rainforest frogs'</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <subjects>
    <subject>chytrid fungus, frog, disease, recovery, temperature, refuge, recolonisation</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2019-09-07</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3402153</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3402152</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="http://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This repository provides all data and R code from the analysis presented in the following&amp;nbsp;paper:&lt;/p&gt;

&lt;p&gt;Bell, S.C., Heard, G.W., Berger, L. and Skerratt, L.F.&amp;nbsp;(in review). Connectivity over a disease risk gradient enables recovery of rainforest frogs.&amp;nbsp;&amp;nbsp;&lt;/p&gt;

&lt;p&gt;The data are provided as a series of .csv files. R code is provided separately for each of the&amp;nbsp;following components:&lt;/p&gt;

&lt;p&gt;1. A script to collate nightly air temperature data from stream-side temperature&amp;nbsp;loggers, plus daily maximum air temperature data&amp;nbsp;from the&amp;nbsp;nearest Australian Bureau of Meteorology recording station to each site.&lt;/p&gt;

&lt;p&gt;2. A script to fit a hierarchical linear model to the stream-side air temperature, with the aid of the&amp;nbsp;R2OpenBUGS package.&lt;/p&gt;

&lt;p&gt;3. A script to fit a&amp;nbsp;hierarchical logistic regression model to the&amp;nbsp;chytrid infection data, with the aid of the R2OpenBUGS package.&lt;/p&gt;

&lt;p&gt;4. A script to fit logistic regression models to the frog occupancy data, with the aid of the R2OpenBUGS package.&amp;nbsp;&lt;/p&gt;

&lt;p&gt;These files allow all analyses from the paper to be reproduced.&amp;nbsp;&lt;/p&gt;</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>Australian Research Council</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000923</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/ARC/Future+Fellowships/FT100100375/">FT100100375</awardNumber>
      <awardTitle>Emergence and evolution of a multi-host pandemic: amphibian chytridiomycosis as a model</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>Australian Research Council</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000923</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/ARC/Linkage+Projects/LP110200240/">LP110200240</awardNumber>
      <awardTitle>Using adaptive and innate immunity to chytridiomycosis to save amphibians from extinction</awardTitle>
    </fundingReference>
  </fundingReferences>
</resource>
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