Conference paper Open Access

Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses

Chard, Kyle; Gaffney, Niall; Jones, Matthew B.; Kowalik, Kacper; Ludaescher, Bertram; McPhillips, Timothy; Nabrzyski, Jarek; Stodden, Victoria; Taylor, Ian; Thelen, Thomas; Turk, Matthew J.; Willis, Craig


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nam##2200000uu#4500</leader>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">executable research objects, computational reproducibility, computational provenance, BagIt-RO</subfield>
  </datafield>
  <controlfield tag="005">20200120171452.0</controlfield>
  <datafield tag="500" ind1=" " ind2=" ">
    <subfield code="a">To appear in 2019 IEEE 15th International Conference on e-Science (e-Science).</subfield>
  </datafield>
  <controlfield tag="001">3381754</controlfield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Texas at Austin</subfield>
    <subfield code="0">(orcid)0000-0002-3668-9853</subfield>
    <subfield code="a">Gaffney, Niall</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of California at Santa Barbara</subfield>
    <subfield code="0">(orcid)0000-0003-0077-4738</subfield>
    <subfield code="a">Jones, Matthew B.</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Illinois at Urbana-Champaign</subfield>
    <subfield code="0">(orcid)0000-0003-1709-3744</subfield>
    <subfield code="a">Kowalik, Kacper</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Illinois at Urbana-Champaign</subfield>
    <subfield code="0">(orcid)0000-0001-9140-936X</subfield>
    <subfield code="a">Ludaescher, Bertram</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Illinois at Urbana-Champaign</subfield>
    <subfield code="0">(orcid)0000-0002-8238-2449</subfield>
    <subfield code="a">McPhillips, Timothy</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Notre Dame</subfield>
    <subfield code="0">(orcid)0000-0002-3985-3620</subfield>
    <subfield code="a">Nabrzyski, Jarek</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Illinois at Urbana-Champaign</subfield>
    <subfield code="0">(orcid)0000-0003-2015-7825</subfield>
    <subfield code="a">Stodden, Victoria</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Notre Dame</subfield>
    <subfield code="0">(orcid)0000-0002-8904-9630</subfield>
    <subfield code="a">Taylor, Ian</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of California at Santa Barbara</subfield>
    <subfield code="a">Thelen, Thomas</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Illinois at Urbana-Champaign</subfield>
    <subfield code="0">(orcid)0000-0002-5294-0198</subfield>
    <subfield code="a">Turk, Matthew J.</subfield>
  </datafield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">University of Illinois at Urbana-Champaign</subfield>
    <subfield code="0">(orcid)0000-0002-6148-7196</subfield>
    <subfield code="a">Willis, Craig</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">12912</subfield>
    <subfield code="z">md5:76dbfc36ae0c1701937865b78cbdafa0</subfield>
    <subfield code="u">https://zenodo.org/record/3381754/files/5cb4ffead9323600016c4d4c.zip</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">1020048</subfield>
    <subfield code="z">md5:1b40e69050bd00b15bc43c9ce7e95f71</subfield>
    <subfield code="u">https://zenodo.org/record/3381754/files/escience-ro-2019.pdf</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2019-07-05</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">openaire</subfield>
    <subfield code="o">oai:zenodo.org:3381754</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">University of Chicago</subfield>
    <subfield code="0">(orcid)0000-0002-7370-4805</subfield>
    <subfield code="a">Chard, Kyle</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;In this paper we describe our experience adopting the Research Object Bundle (RO-Bundle) format with BagIt&amp;nbsp;&lt;br&gt;
serialization (BagIt-RO) for the design and implementation of &amp;quot;tales&amp;quot; in the Whole Tale&amp;nbsp;&lt;br&gt;
platform. A &lt;em&gt;tale&lt;/em&gt;&amp;nbsp;is an executable research object intended for the dissemination of&amp;nbsp;&lt;br&gt;
computational scientific findings that captures information needed to facilitate understanding,&amp;nbsp;&lt;br&gt;
transparency, and re-execution for review and computational reproducibility at the time of publication.&amp;nbsp;&lt;br&gt;
We describe the Whole Tale platform and requirements that led to our adoption of BagIt-RO, specifics&amp;nbsp;&lt;br&gt;
of our implementation, and discuss migrating to the emerging Research Object Crate (RO-Crate)&amp;nbsp;&lt;br&gt;
standard.&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">references</subfield>
    <subfield code="a">10.5281/zenodo.2641314</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.3268965</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.3381754</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">publication</subfield>
    <subfield code="b">conferencepaper</subfield>
  </datafield>
</record>
331
205
views
downloads
All versions This version
Views 331183
Downloads 205102
Data volume 162.7 MB59.7 MB
Unique views 274158
Unique downloads 17495

Share

Cite as