Conference paper Open Access

Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses

Chard, Kyle; Gaffney, Niall; Jones, Matthew B.; Kowalik, Kacper; Ludaescher, Bertram; McPhillips, Timothy; Nabrzyski, Jarek; Stodden, Victoria; Taylor, Ian; Thelen, Thomas; Turk, Matthew J.; Willis, Craig


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{
  "description": "<p>In this paper we describe our experience adopting the Research Object Bundle (RO-Bundle) format with BagIt&nbsp;<br>\nserialization (BagIt-RO) for the design and implementation of &quot;tales&quot; in the Whole Tale&nbsp;<br>\nplatform. A <em>tale</em>&nbsp;is an executable research object intended for the dissemination of&nbsp;<br>\ncomputational scientific findings that captures information needed to facilitate understanding,&nbsp;<br>\ntransparency, and re-execution for review and computational reproducibility at the time of publication.&nbsp;<br>\nWe describe the Whole Tale platform and requirements that led to our adoption of BagIt-RO, specifics&nbsp;<br>\nof our implementation, and discuss migrating to the emerging Research Object Crate (RO-Crate)&nbsp;<br>\nstandard.</p>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "University of Chicago", 
      "@id": "https://orcid.org/0000-0002-7370-4805", 
      "@type": "Person", 
      "name": "Chard, Kyle"
    }, 
    {
      "affiliation": "University of Texas at Austin", 
      "@id": "https://orcid.org/0000-0002-3668-9853", 
      "@type": "Person", 
      "name": "Gaffney, Niall"
    }, 
    {
      "affiliation": "University of California at Santa Barbara", 
      "@id": "https://orcid.org/0000-0003-0077-4738", 
      "@type": "Person", 
      "name": "Jones, Matthew B."
    }, 
    {
      "affiliation": "University of Illinois at Urbana-Champaign", 
      "@id": "https://orcid.org/0000-0003-1709-3744", 
      "@type": "Person", 
      "name": "Kowalik, Kacper"
    }, 
    {
      "affiliation": "University of Illinois at Urbana-Champaign", 
      "@id": "https://orcid.org/0000-0001-9140-936X", 
      "@type": "Person", 
      "name": "Ludaescher, Bertram"
    }, 
    {
      "affiliation": "University of Illinois at Urbana-Champaign", 
      "@id": "https://orcid.org/0000-0002-8238-2449", 
      "@type": "Person", 
      "name": "McPhillips, Timothy"
    }, 
    {
      "affiliation": "University of Notre Dame", 
      "@id": "https://orcid.org/0000-0002-3985-3620", 
      "@type": "Person", 
      "name": "Nabrzyski, Jarek"
    }, 
    {
      "affiliation": "University of Illinois at Urbana-Champaign", 
      "@id": "https://orcid.org/0000-0003-2015-7825", 
      "@type": "Person", 
      "name": "Stodden, Victoria"
    }, 
    {
      "affiliation": "University of Notre Dame", 
      "@id": "https://orcid.org/0000-0002-8904-9630", 
      "@type": "Person", 
      "name": "Taylor, Ian"
    }, 
    {
      "affiliation": "University of California at Santa Barbara", 
      "@type": "Person", 
      "name": "Thelen, Thomas"
    }, 
    {
      "affiliation": "University of Illinois at Urbana-Champaign", 
      "@id": "https://orcid.org/0000-0002-5294-0198", 
      "@type": "Person", 
      "name": "Turk, Matthew J."
    }, 
    {
      "affiliation": "University of Illinois at Urbana-Champaign", 
      "@id": "https://orcid.org/0000-0002-6148-7196", 
      "@type": "Person", 
      "name": "Willis, Craig"
    }
  ], 
  "headline": "Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses", 
  "image": "https://zenodo.org/static/img/logos/zenodo-gradient-round.svg", 
  "citation": [
    {
      "@id": "https://doi.org/10.5281/zenodo.2641314", 
      "@type": "CreativeWork"
    }
  ], 
  "datePublished": "2019-07-05", 
  "url": "https://zenodo.org/record/3381754", 
  "keywords": [
    "executable research objects, computational reproducibility, computational provenance, BagIt-RO"
  ], 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.3381754", 
  "@id": "https://doi.org/10.5281/zenodo.3381754", 
  "@type": "ScholarlyArticle", 
  "name": "Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses"
}
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