Conference paper Open Access

Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses

Chard, Kyle; Gaffney, Niall; Jones, Matthew B.; Kowalik, Kacper; Ludaescher, Bertram; McPhillips, Timothy; Nabrzyski, Jarek; Stodden, Victoria; Taylor, Ian; Thelen, Thomas; Turk, Matthew J.; Willis, Craig


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  <identifier identifierType="DOI">10.5281/zenodo.3381754</identifier>
  <creators>
    <creator>
      <creatorName>Chard, Kyle</creatorName>
      <givenName>Kyle</givenName>
      <familyName>Chard</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7370-4805</nameIdentifier>
      <affiliation>University of Chicago</affiliation>
    </creator>
    <creator>
      <creatorName>Gaffney, Niall</creatorName>
      <givenName>Niall</givenName>
      <familyName>Gaffney</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-3668-9853</nameIdentifier>
      <affiliation>University of Texas at Austin</affiliation>
    </creator>
    <creator>
      <creatorName>Jones, Matthew B.</creatorName>
      <givenName>Matthew B.</givenName>
      <familyName>Jones</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-0077-4738</nameIdentifier>
      <affiliation>University of California at Santa Barbara</affiliation>
    </creator>
    <creator>
      <creatorName>Kowalik, Kacper</creatorName>
      <givenName>Kacper</givenName>
      <familyName>Kowalik</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-1709-3744</nameIdentifier>
      <affiliation>University of Illinois at Urbana-Champaign</affiliation>
    </creator>
    <creator>
      <creatorName>Ludaescher, Bertram</creatorName>
      <givenName>Bertram</givenName>
      <familyName>Ludaescher</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-9140-936X</nameIdentifier>
      <affiliation>University of Illinois at Urbana-Champaign</affiliation>
    </creator>
    <creator>
      <creatorName>McPhillips, Timothy</creatorName>
      <givenName>Timothy</givenName>
      <familyName>McPhillips</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-8238-2449</nameIdentifier>
      <affiliation>University of Illinois at Urbana-Champaign</affiliation>
    </creator>
    <creator>
      <creatorName>Nabrzyski, Jarek</creatorName>
      <givenName>Jarek</givenName>
      <familyName>Nabrzyski</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-3985-3620</nameIdentifier>
      <affiliation>University of Notre Dame</affiliation>
    </creator>
    <creator>
      <creatorName>Stodden, Victoria</creatorName>
      <givenName>Victoria</givenName>
      <familyName>Stodden</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-2015-7825</nameIdentifier>
      <affiliation>University of Illinois at Urbana-Champaign</affiliation>
    </creator>
    <creator>
      <creatorName>Taylor, Ian</creatorName>
      <givenName>Ian</givenName>
      <familyName>Taylor</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-8904-9630</nameIdentifier>
      <affiliation>University of Notre Dame</affiliation>
    </creator>
    <creator>
      <creatorName>Thelen, Thomas</creatorName>
      <givenName>Thomas</givenName>
      <familyName>Thelen</familyName>
      <affiliation>University of California at Santa Barbara</affiliation>
    </creator>
    <creator>
      <creatorName>Turk, Matthew J.</creatorName>
      <givenName>Matthew J.</givenName>
      <familyName>Turk</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-5294-0198</nameIdentifier>
      <affiliation>University of Illinois at Urbana-Champaign</affiliation>
    </creator>
    <creator>
      <creatorName>Willis, Craig</creatorName>
      <givenName>Craig</givenName>
      <familyName>Willis</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-6148-7196</nameIdentifier>
      <affiliation>University of Illinois at Urbana-Champaign</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2019</publicationYear>
  <subjects>
    <subject>executable research objects, computational reproducibility, computational provenance, BagIt-RO</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2019-07-05</date>
  </dates>
  <resourceType resourceTypeGeneral="Text">Conference paper</resourceType>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3381754</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="References">10.5281/zenodo.2641314</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3268965</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;In this paper we describe our experience adopting the Research Object Bundle (RO-Bundle) format with BagIt&amp;nbsp;&lt;br&gt;
serialization (BagIt-RO) for the design and implementation of &amp;quot;tales&amp;quot; in the Whole Tale&amp;nbsp;&lt;br&gt;
platform. A &lt;em&gt;tale&lt;/em&gt;&amp;nbsp;is an executable research object intended for the dissemination of&amp;nbsp;&lt;br&gt;
computational scientific findings that captures information needed to facilitate understanding,&amp;nbsp;&lt;br&gt;
transparency, and re-execution for review and computational reproducibility at the time of publication.&amp;nbsp;&lt;br&gt;
We describe the Whole Tale platform and requirements that led to our adoption of BagIt-RO, specifics&amp;nbsp;&lt;br&gt;
of our implementation, and discuss migrating to the emerging Research Object Crate (RO-Crate)&amp;nbsp;&lt;br&gt;
standard.&lt;/p&gt;</description>
    <description descriptionType="Other">To appear in 2019 IEEE 15th International Conference on e-Science (e-Science).</description>
  </descriptions>
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