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CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis

Zhu, Qian; Liu, Nan; Orkin, Stuart; Yuan, Guo-Cheng


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.3374112", 
  "language": "eng", 
  "title": "CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis", 
  "issued": {
    "date-parts": [
      [
        2019, 
        8, 
        22
      ]
    ]
  }, 
  "abstract": "<p>We introduce CUT&amp;RUNTools as a flexible, general pipeline for facilitating the identification of chromatin-associated protein binding and genomic footprinting analysis from antibody-targeted CUT&amp;RUN primary cleavage data. CUT&amp;RUNTools extracts endonuclease cut site information from sequences of short read fragments and produces single-locus binding estimates, aggregate motif footprints, and informative visualizations to support the high-resolution mapping capability of CUT&amp;RUN. CUT&amp;RUNTools is available at https://bitbucket.org/qzhudfci/cutruntools/.</p>", 
  "author": [
    {
      "family": "Zhu, Qian"
    }, 
    {
      "family": "Liu, Nan"
    }, 
    {
      "family": "Orkin, Stuart"
    }, 
    {
      "family": "Yuan, Guo-Cheng"
    }
  ], 
  "note": "Please see the repository website http://bitbucket.org/qzhudfci/cutruntools/ for installation and usage information, and for updates. Usage information is also located in this software package. See README.md, INSTALL.md, and USAGE.md for details.", 
  "version": "Initial version", 
  "type": "article", 
  "id": "3374112"
}
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