Software Open Access

Seq (OOPSLA 2019 Artifact)

Shajii, Ariya; Numanagić, Ibrahim; Baghdadi, Riyadh; Berger, Bonnie; Amarasinghe, Saman


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    <subfield code="a">&lt;p&gt;This is the artifact submitted alongside the Seq paper to OOPSLA 2019, which consists of a VM containing an alpha build of Seq, as well as a usage guide.&lt;/p&gt;

&lt;p&gt;Seq is a programming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host of domain-specific features and optimizations, Seq makes writing high-performance genomics software as easy as writing Python code, and achieves performance comparable to (and in many cases better than) C/C++.&lt;/p&gt;

&lt;p&gt;&lt;a href="http://seq.csail.mit.edu"&gt;http://seq.csail.mit.edu&lt;/a&gt;&lt;/p&gt;</subfield>
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