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Design and in vitro realization of carbon-conserving photorespiration - Computational Analysis

Trudeau, Devin L.; Edlich-Muth, Christian; Zarzycki, Jan; Scheffen, Marieke; Goldsmith, Moshe; Khersonsky, Olga; Avizemer, Ziv; Fleishman, Sarel J.; Cotton, Charles A.R; Erb, Tobias J.; Tawfik, Dan S.; Bar-Even, Arren


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{
  "inLanguage": {
    "alternateName": "eng", 
    "@type": "Language", 
    "name": "English"
  }, 
  "description": "<p>Our aim is to develop a framework for modeling C3 photosynthesis&nbsp;in mesophyll cells that allows us to compare native photorespiration with engineered photosynthetic shunts. In particular, we want to model conditions that are most relevant to agricultural crops, i.e. a range of light intensities and both ambient and low CO2 intercellular airspace concentrations. Here we presented our computational analysis based on pathSeekR, the stoichiometric-kinetic model,&nbsp; kinetic models of photorespiration shunts and pathSeekR pathway architectures.&nbsp;</p>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel", 
      "@type": "Person", 
      "name": "Trudeau, Devin L."
    }, 
    {
      "affiliation": "Max Planck Institute of Molecular Plant Physiology, Am M\u00fchlenberg 1, 14476 Potsdam-Golm, Germany", 
      "@type": "Person", 
      "name": "Edlich-Muth, Christian"
    }, 
    {
      "affiliation": "Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Stra\u00dfe 10, D-35043 Marburg, Germany", 
      "@type": "Person", 
      "name": "Zarzycki, Jan"
    }, 
    {
      "affiliation": "Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Stra\u00dfe 10, D-35043 Marburg, Germany", 
      "@type": "Person", 
      "name": "Scheffen, Marieke"
    }, 
    {
      "affiliation": "Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel", 
      "@type": "Person", 
      "name": "Goldsmith, Moshe"
    }, 
    {
      "affiliation": "Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel", 
      "@type": "Person", 
      "name": "Khersonsky, Olga"
    }, 
    {
      "affiliation": "Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel", 
      "@type": "Person", 
      "name": "Avizemer, Ziv"
    }, 
    {
      "affiliation": "Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel", 
      "@type": "Person", 
      "name": "Fleishman, Sarel J."
    }, 
    {
      "affiliation": "Max Planck Institute of Molecular Plant Physiology, Am M\u00fchlenberg 1, 14476 Potsdam-Golm, Germany", 
      "@type": "Person", 
      "name": "Cotton, Charles A.R"
    }, 
    {
      "affiliation": "Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Stra\u00dfe 10, D-35043 Marburg, Germany", 
      "@type": "Person", 
      "name": "Erb, Tobias J."
    }, 
    {
      "affiliation": "Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel", 
      "@type": "Person", 
      "name": "Tawfik, Dan S."
    }, 
    {
      "affiliation": "Max Planck Institute of Molecular Plant Physiology, Am M\u00fchlenberg 1, 14476 Potsdam-Golm, Germany", 
      "@type": "Person", 
      "name": "Bar-Even, Arren"
    }
  ], 
  "url": "https://zenodo.org/record/3373445", 
  "datePublished": "2018-11-19", 
  "keywords": [
    "computational modeling", 
    "photosynthesis", 
    "photorespiration", 
    "C3 photosynthesis", 
    "pathSeekR"
  ], 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/b72029c7-0d78-4c35-8093-8ab9c6c84db5/pnas.1812605115.sd01_SI_ComputationalAnalysis.pdf", 
      "encodingFormat": "pdf", 
      "@type": "DataDownload"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.3373445", 
  "@id": "https://doi.org/10.5281/zenodo.3373445", 
  "@type": "Dataset", 
  "name": "Design and in vitro realization of carbon-conserving photorespiration - Computational Analysis"
}
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