Dataset Open Access

Design and in vitro realization of carbon-conserving photorespiration - Computational Analysis

Trudeau, Devin L.; Edlich-Muth, Christian; Zarzycki, Jan; Scheffen, Marieke; Goldsmith, Moshe; Khersonsky, Olga; Avizemer, Ziv; Fleishman, Sarel J.; Cotton, Charles A.R; Erb, Tobias J.; Tawfik, Dan S.; Bar-Even, Arren


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  <identifier identifierType="DOI">10.5281/zenodo.3373445</identifier>
  <creators>
    <creator>
      <creatorName>Trudeau, Devin L.</creatorName>
      <givenName>Devin L.</givenName>
      <familyName>Trudeau</familyName>
      <affiliation>Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel</affiliation>
    </creator>
    <creator>
      <creatorName>Edlich-Muth, Christian</creatorName>
      <givenName>Christian</givenName>
      <familyName>Edlich-Muth</familyName>
      <affiliation>Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Zarzycki, Jan</creatorName>
      <givenName>Jan</givenName>
      <familyName>Zarzycki</familyName>
      <affiliation>Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, D-35043 Marburg, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Scheffen, Marieke</creatorName>
      <givenName>Marieke</givenName>
      <familyName>Scheffen</familyName>
      <affiliation>Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, D-35043 Marburg, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Goldsmith, Moshe</creatorName>
      <givenName>Moshe</givenName>
      <familyName>Goldsmith</familyName>
      <affiliation>Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel</affiliation>
    </creator>
    <creator>
      <creatorName>Khersonsky, Olga</creatorName>
      <givenName>Olga</givenName>
      <familyName>Khersonsky</familyName>
      <affiliation>Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel</affiliation>
    </creator>
    <creator>
      <creatorName>Avizemer, Ziv</creatorName>
      <givenName>Ziv</givenName>
      <familyName>Avizemer</familyName>
      <affiliation>Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel</affiliation>
    </creator>
    <creator>
      <creatorName>Fleishman, Sarel J.</creatorName>
      <givenName>Sarel J.</givenName>
      <familyName>Fleishman</familyName>
      <affiliation>Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel</affiliation>
    </creator>
    <creator>
      <creatorName>Cotton, Charles A.R</creatorName>
      <givenName>Charles A.R</givenName>
      <familyName>Cotton</familyName>
      <affiliation>Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Erb, Tobias J.</creatorName>
      <givenName>Tobias J.</givenName>
      <familyName>Erb</familyName>
      <affiliation>Max Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Straße 10, D-35043 Marburg, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Tawfik, Dan S.</creatorName>
      <givenName>Dan S.</givenName>
      <familyName>Tawfik</familyName>
      <affiliation>Department of Biomolecular Sciences, Weizmann Institute of Science, 234 Herzl Street, Rehovot 7610001, Israel</affiliation>
    </creator>
    <creator>
      <creatorName>Bar-Even, Arren</creatorName>
      <givenName>Arren</givenName>
      <familyName>Bar-Even</familyName>
      <affiliation>Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Design and in vitro realization of carbon-conserving photorespiration - Computational Analysis</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2018</publicationYear>
  <subjects>
    <subject>computational modeling</subject>
    <subject>photosynthesis</subject>
    <subject>photorespiration</subject>
    <subject>C3 photosynthesis</subject>
    <subject>pathSeekR</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2018-11-19</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/3373445</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3373444</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Our aim is to develop a framework for modeling C3 photosynthesis&amp;nbsp;in mesophyll cells that allows us to compare native photorespiration with engineered photosynthetic shunts. In particular, we want to model conditions that are most relevant to agricultural crops, i.e. a range of light intensities and both ambient and low CO2 intercellular airspace concentrations. Here we presented our computational analysis based on pathSeekR, the stoichiometric-kinetic model,&amp;nbsp; kinetic models of photorespiration shunts and pathSeekR pathway architectures.&amp;nbsp;&lt;/p&gt;</description>
    <description descriptionType="Other">Supplementary Material to https://doi.org/10.1073/pnas.1812605115</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>European Commission</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000780</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/EC/H2020/686330/">686330</awardNumber>
      <awardTitle>Transforming the future of agriculture through synthetic photorespiration</awardTitle>
    </fundingReference>
  </fundingReferences>
</resource>
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