Planned intervention: On Wednesday April 3rd 05:30 UTC Zenodo will be unavailable for up to 2-10 minutes to perform a storage cluster upgrade.
Published August 6, 2019 | Version v1
Dataset Open

COG_Functional_Category_Abundances_and_GTDB_Taxonomy

  • 1. University of Tennessee

Description

Dataset S1:

Individual rows correspond to individual genomes (excluding the top row which are column headers). Columns 1 through 25 correspond to raw abundances for each COG functional category. Column 26 corresponds to the total number of COGs in a genome. Columns 27, 28, 29, 30, 31, 32, and 33, correspond to the GTDB domain, phylum, class, order, family, genus, and species classification, respectively. Column 34 corresponds to the culture-status. Column 35 is the genomes size in base pairs. Column 36 corresponds to the accession number for each genome. Accessions starting with GCF and GCA are from Refseq and Genbank, respectively. Accessions that are numbers only correspond to IMG/G. Column 37 corresponds to the total number of open reading frames in the genome.

Files

DatasetS1.csv

Files (29.0 MB)

Name Size Download all
md5:6488d04960b3a56ac94c8c0487d06918
29.0 MB Preview Download

Additional details

Related works

Is supplement to
10.1101/520973 (DOI)
10.1128/mSphere.00446-19 (DOI)