Software Open Access

PeaKO: MEME Suite CentriMo patch and binary

Bailey, Timothy L.; Machanick, Philip; Johnson, James; Grant, Charles E.; Viner, Coby; Denisko, Danielle; Hoffman, Michael M.

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    <subfield code="a">MEME Suite</subfield>
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    <subfield code="a">CentriMo</subfield>
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    <subfield code="a">All contents of the upload are licensed under the same terms as the MEME Suite itself:

MEME Suite
    Authors: Timothy L. Bailey, William Noble
    Copyright  (c)  1994-2015  The  Regents  of the  University of 
    California.  All  Rights  Reserved.                        
                                    
    Permission  to use,  copy,  modify,  and  distribute  any part
    of this  software for  educational,  research  and  non-profit 
    purposes,  without  fee,  and  without a written  agreement is 
    hereby  granted,  provided  that the  above  copyright notice, 
    this paragraph  and the following  three  paragraphs appear in 
    all copies.        
                                    
    Those  desiring to  incorporate this  software into commercial
    products  or use for  commercial  purposes  should contact the     
    Technology  Transfer  Office,  University of California,   San 
    Diego,  9500 Gilman Drive,  La Jolla,  California, 92093-0910,         
    Phone: (858) 534-5815.
                                    
    IN  NO  EVENT  SHALL THE  UNIVERSITY  OF CALIFORNIA  BE LIABLE 
    TO  ANY  PARTY FOR  DIRECT,  INDIRECT, SPECIAL, INCIDENTAL, OR     
    CONSEQUENTIAL  DAMAGES,  INCLUDING  LOST PROFITS, ARISING  OUT 
    OF  THE  USE  OF  THIS  SOFTWARE,  EVEN  IF THE UNIVERSITY  OF 
    CALIFORNIA  HAS  BEEN  ADVISED  OF  THE  POSSIBILITY  OF  SUCH 
    DAMAGE.
                                    
    THE SOFTWARE  PROVIDED HEREUNDER IS ON AN  "AS IS" BASIS,  AND 
    THE  UNIVERSITY OF CALIFORNIA  HAS  NO OBLIGATIONS  TO PROVIDE         
    MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.  
    THE UNIVERSITY  OF CALIFORNIA  MAKES  NO  REPRESENTATIONS  AND     
    EXTENDS  NO  WARRANTIES  OF  ANY  KIND,  EITHER  EXPRESSED  OR 
    IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
    OF  MERCHANTABILITY  OR  FITNESS FOR A  PARTICULAR PURPOSE, OR 
    THAT  THE USE  OF THE MATERIAL  WILL NOT  INFRINGE ANY PATENT,         
    TRADEMARK OR OTHER RIGHTS.</subfield>
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    <subfield code="u">Department of Computer Science, Rhodes University, Grahamstown, Eastern Cape, South Africa</subfield>
    <subfield code="0">(orcid)0000-0001-6648-7032</subfield>
    <subfield code="a">Machanick, Philip</subfield>
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    <subfield code="u">Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia</subfield>
    <subfield code="a">Johnson, James</subfield>
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    <subfield code="u">Department of Genome Sciences, Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA</subfield>
    <subfield code="a">Grant, Charles E.</subfield>
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    <subfield code="u">Department of Computer Science, University of Toronto, Toronto, ON, Canada</subfield>
    <subfield code="0">(orcid)0000-0001-8097-6991</subfield>
    <subfield code="a">Viner, Coby</subfield>
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    <subfield code="0">(orcid)0000-0002-8544-0026</subfield>
    <subfield code="a">Denisko, Danielle</subfield>
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    <subfield code="0">(orcid)0000-0002-4517-1562</subfield>
    <subfield code="a">Hoffman, Michael M.</subfield>
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    <subfield code="c">2019-08-27</subfield>
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    <subfield code="u">Department of Pharmacology, University of Nevada Reno, Reno, NV, USA</subfield>
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    <subfield code="a">Bailey, Timothy L.</subfield>
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	&lt;li&gt;patch_5.0.5_peaKO.txt:&amp;nbsp;Patch file, against MEME Suite version 5.0.5, for our changes to centrimo.c&lt;/li&gt;
	&lt;li&gt;revised_CentriMo_test_files.tar.gz: tarball, containing all revised CentriMo test files that differ after this patch (only those with differences are included, within the same directory structure as in the distribution)&lt;/li&gt;
	&lt;li&gt;centrimo: CentriMo binary (i386:x86-64) that we used to generate our published results&lt;/li&gt;
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Publication date:
August 27, 2019
DOI:
10.5281/zenodo.3356995

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Keyword(s):
MEME Suite CentriMo
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Version 5.0.5_1 10.5281/zenodo.3356995 Aug 27, 2019
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